PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00030.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 467aa    MW: 49353.1 Da    PI: 8.0553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00030.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-125276327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C +++rtG C yG+rC+F+H++
  Rsa1.0_00030.1_g00013.1 52 EPDCIYYLRTGVCGYGSRCRFNHPR 76
                             799********************96 PP
2zf-CCCH36.39.4e-12101125327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C++f+rtGtC++G++Ck++H++
  Rsa1.0_00030.1_g00013.1 101 HPVCQHFMRTGTCQFGASCKYHHPR 125
                              789********************96 PP
3zf-CCCH39.41e-12146170226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++++rtG+Ck+G +C+F+H+
  Rsa1.0_00030.1_g00013.1 146 GEKECSYYMRTGQCKFGLTCRFNHP 170
                              7899********************9 PP
4zf-CCCH39.31.1e-12311335226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++f+rtG Ck+G++C+++H+
  Rsa1.0_00030.1_g00013.1 311 DQPECQYFMRTGNCKFGSSCRYHHP 335
                              689*********************9 PP
5zf-CCCH32.61.4e-10357382227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              + + C +fa+ G+Ck+G+ CkF H++
  Rsa1.0_00030.1_g00013.1 357 GVAQCTHFAQHGICKFGPACKFDHSM 382
                              6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-44976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8824977IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-95276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23498126IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-598125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-699125IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5103125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408144172IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6144171IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5146171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4150169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746309337IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7309336IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10311335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6312338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5315335IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347355383IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8357381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5358383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4361382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSIQW TSHGVEASMT RLVLSGGGAG GGGESYPERS DEPDCIYYLR  60
TGVCGYGSRC RFNHPRDRGA VIGGVRGGGG GDGALPERMG HPVCQHFMRT GTCQFGASCK  120
YHHPRQGGGS IAPVSLSYLG YPLRPGEKEC SYYMRTGQCK FGLTCRFNHP VPLGVHGQQP  180
QQQQQQPQPQ MHSVYPTLQS QSMPSSPQQY GLVLSRPSLL PGSYLPSHYG SPPPPMVMPP  240
GMVTYPSWNP YQASITAMPS PGTQPSIGSS SVYGMASLSP PGTAYTRAYQ SGGPSSLTTS  300
TEQQSFPQRP DQPECQYFMR TGNCKFGSSC RYHHPLDAAQ PKTGVVLSSS GLPLLPGVAQ  360
CTHFAQHGIC KFGPACKFDH SMSSSLSYSP SASSLTEIPV APYPIGSSSL SGASAQVSSS  420
NEPTTEAVTA VVSPPTVVSG LSLEKPADTS VDSSSVNSSI EAKTSSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00030.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440489.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_006407949.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-169C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]