PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00022.1_g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 21353.7 Da PI: 4.6913 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.5 | 1.9e-34 | 3 | 118 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r t++gyW + Rsa1.0_00022.1_g00025.1 3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPHDPWDLPGKALQEGRQWYFYSRKT--------QERLTSNGYWGSM 79 79*************************999.99***************77778899*****9975........47999******** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++++++ ++++vg+kk L+fy g++ +t+Wvm+ey+l Rsa1.0_00022.1_g00025.1 80 GTDEPIFTSsTHKKVGIKKYLTFYLGDS----QTNWVMQEYSL 118 ******99867888**********7654....68*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-43 | 1 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.724 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-22 | 4 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPHDPWDLPG KALQEGRQWY 60 FYSRKTQERL TSNGYWGSMG TDEPIFTSST HKKVGIKKYL TFYLGDSQTN WVMQEYSLPD 120 SSSRSSKRSN RGSTSSTHKP DYSKWVICRV YEQNCSEEED DDGAELSCLD EVFLSLDDLD 180 EVSLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-37 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00022.1_g00025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966746 | 0.0 | KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433233.1 | 1e-135 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 1e-116 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A078H0M4 | 1e-121 | A0A078H0M4_BRANA; BnaA02g34250D protein | ||||
TrEMBL | A0A078IBS6 | 1e-116 | A0A078IBS6_BRANA; BnaC02g43170D protein | ||||
TrEMBL | A0A398ANP3 | 1e-121 | A0A398ANP3_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6AL41 | 1e-121 | A0A3P6AL41_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6D8I0 | 1e-116 | A0A3P6D8I0_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4ESY5 | 1e-121 | M4ESY5_BRARP; Uncharacterized protein | ||||
STRING | Bra031915.1-P | 1e-122 | (Brassica rapa) | ||||
STRING | Bo2g166280.1 | 1e-117 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-112 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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