PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00032.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 488aa    MW: 55420.9 Da    PI: 5.3533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00032.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.8e-1122841690
                             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                             l+l  +f+++h ++      l   d s+++Wevkl  ++++    l++GW+eF+  ++  +gD++vF++++++ f
  Rsa1.0_00017.1_g00032.1 22 LTLDDEFLRNHTKV------LLTSDASNKTWEVKL--DGNK----LAGGWEEFAAVHNFSDGDVLVFSHNEDEIF 84
                             56677777777544......55577999*******..9999....***********************7665544 PP
2B367.61.8e-21144241199
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f+ + ++ ++l ++rl l+++f      ++k  ++ ++ l +e+gr+W+++l+ + + g++++t+GW +F++angL +gD++ Fkl
  Rsa1.0_00017.1_g00032.1 144 FLRARVTRYSLIRDRLDLSRDFKFMSfdEHK--KPCEIYLVNEEGRKWTLRLSRNISNGGFYITRGWTNFCSANGLSQGDICNFKL 227
                              5667788999999*******99423334555..5669***************99999999*************************9 PP

                              -SSSEE..EEEEE-S CS
                       B3  85 dgrsefelvvkvfrk 99 
                              ++ s++++v+ ++++
  Rsa1.0_00017.1_g00032.1 228 SE-SGERPVLLLCSH 241
                              76.888899999987 PP
3B347.33.7e-15291376999
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              +  k+g+lv    f+ e g++  +s+++tl  ++gr+W+ +l++  + +++++++++ W+e++kang++++D++v++l+  +++++
  Rsa1.0_00017.1_g00032.1 291 NRVKTGQLV----FLGESGIN--KSMEITLLKKDGRKWSSYLQMsgQPGREMFYIRNDWREMCKANGVQVKDSFVLELIC-ENANP 369
                              555555555....55555666..799****************9945555555**************************99.78889 PP

                              EEEEE-S CS
                       B3  93 vvkvfrk 99 
                               +k+++k
  Rsa1.0_00017.1_g00032.1 370 IFKFHSK 376
                              9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.489192IPR003340B3 DNA binding domain
SMARTSM010192.3E-91092IPR003340B3 DNA binding domain
CDDcd100172.33E-72286No hitNo description
Gene3DG3DSA:2.40.330.101.2E-93088IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-93288IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-22144242IPR003340B3 DNA binding domain
PROSITE profilePS5086316.102144241IPR003340B3 DNA binding domain
PfamPF023622.4E-18145241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-17149240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-19154242IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-19154240No hitNo description
SMARTSM010191.6E-11269377IPR003340B3 DNA binding domain
PfamPF023621.8E-15283376IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-10285375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-11298376IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-10305375No hitNo description
PROSITE profilePS508639.037311377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVVPPKPSLF QWRFLTGDKP VLTLDDEFLR NHTKVLLTSD ASNKTWEVKL DGNKLAGGWE  60
EFAAVHNFSD GDVLVFSHNE DEIFHVARSS NSDIEHESPS FTDTDDDTEV DDESDDDDDV  120
EVDDAAGDIL VEKNKKPEAD TSCFLRARVT RYSLIRDRLD LSRDFKFMSF DEHKKPCEIY  180
LVNEEGRKWT LRLSRNISNG GFYITRGWTN FCSANGLSQG DICNFKLSES GERPVLLLCS  240
HESGNGHEDK EEEECPEADA VKICSVGGCS KEKTTSEKNT PRFLTLEYTP NRVKTGQLVF  300
LGESGINKSM EITLLKKDGR KWSSYLQMSG QPGREMFYIR NDWREMCKAN GVQVKDSFVL  360
ELICENANPI FKFHSKIENK GKGKIITRKK RARHLSTVEN TPEGSKRGRT RVSNRSNTNL  420
KREQPESCSV SDQVANVKQS IQDTLNTIRH FRGELETREK NLEASLLEVD DLGERILGIS  480
KILNNNLV
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517721e-147AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468355.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A398AIY10.0A0A398AIY1_BRACM; Uncharacterized protein
STRINGBo1g011120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-155B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]