PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00016.1_g00043.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 234aa    MW: 26052.1 Da    PI: 5.0156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00016.1_g00043.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.4e-1958108155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Rsa1.0_00016.1_g00043.1  58 PVYRGVRMRS-WGKWVSEIREPRK---KSRVWLGTFPTPEMAARAHDVAALSIKG 108
                              68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1358108IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2159117IPR016177DNA-binding domain
PROSITE profilePS5103223.51259116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3259117IPR001471AP2/ERF domain
SMARTSM003809.0E-3759122IPR001471AP2/ERF domain
PRINTSPR003672.2E-106071IPR001471AP2/ERF domain
CDDcd000181.39E-3260118No hitNo description
PRINTSPR003672.2E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVASASESRS VEEYYSRQAE RVTQVPNSAS DLMTDESKAE QNENSKKTKR VKDSGKHPVY  60
RGVRMRSWGK WVSEIREPRK KSRVWLGTFP TPEMAARAHD VAALSIKGTS AILNFPELAD  120
SFPRPVSLNP RDIQTAALKA AHMEPTTSFT SSTSSLESLV MVMDLSKTES EELDEIVELP  180
SLGSNCDVHS ASFGKEFVFS DSVDYCLYPP PWGQWSEDSY GISPSFNNGL SWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19571161272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00016.1_g00043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443893.11e-173PREDICTED: dehydration-responsive element-binding protein 3-like
RefseqXP_018443894.11e-173PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-119DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A397XS691e-147A0A397XS69_BRACM; Uncharacterized protein
STRINGBra008952.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-116ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]