PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00014.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | DBB | ||||||||
Protein Properties | Length: 319aa MW: 35385.5 Da PI: 6.6536 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.6 | 5.1e-08 | 3 | 34 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 +C+ ++++e++ fC+ ++ lC+ C + H+ Rsa1.0_00014.1_g00012.1 3 IRCDVCDKEEASVFCTADEASLCDGCDHQVHH 34 58***************************974 PP | |||||||
2 | zf-B_box | 35.2 | 2.6e-11 | 56 | 94 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + ++C+ ++ek++ lfC++++ lC+dC +++H+ Ht Rsa1.0_00014.1_g00012.1 56 SSPICDICQEKKAVLFCQQDRAILCADCDSSIHSAneHT 94 5689*****************************657876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.751 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.2E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.33E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.6E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-15 | 55 | 102 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.537 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-9 | 57 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.29E-12 | 58 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MKIRCDVCDK EEASVFCTAD EASLCDGCDH QVHHANKLAS KHLRFSLLCP SSSENSSPIC 60 DICQEKKAVL FCQQDRAILC ADCDSSIHSA NEHTKKHDRF LLTGVKLSPT SSVYKPTSDS 120 PLNSQDCSVP ALSKKPISAP QSQIKSSKIQ PSKISSDVGM NQWGSTSTIS EYLIDTLPGW 180 HVEDFLDSSL PPFGFSKSGD DDGVLPYMEA KDDSTKRNNN NTVSLPSKNM GIWVPQIPQT 240 LPSSYTNQYF SQDNNIQCGM YNNKEASHGV ETYAPIQNMK QQGQNKRWYD DGGFTVPQIT 300 TTFTHPPPIT SNKRSRSFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00014.1_g00012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189586 | 1e-174 | AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447019.1 | 0.0 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-172 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A078IDU4 | 0.0 | A0A078IDU4_BRANA; BnaAnng09120D protein | ||||
TrEMBL | A0A3P6BL78 | 0.0 | A0A3P6BL78_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DH58 | 0.0 | M4DH58_BRARP; Uncharacterized protein | ||||
STRING | Bra015835.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-152 | salt tolerance homolog2 |