PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00014.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 416aa    MW: 41129.5 Da    PI: 7.9989
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00014.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.72.9e-093392463
                             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                              ++ +r+++NRe+ArrsR +K++ +++L    ++L + N++ + el   ++++ k ++e+
  Rsa1.0_00014.1_g00002.1 33 ERKRKRLESNRESARRSRMKKRELLDRLNVQLEQLRKVNRQTAIELGVTTEHCVKTEAEN 92
                             57889******************************************9999999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-729114No hitNo description
SMARTSM003384.2E-113094IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0023278IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.01E-73485No hitNo description
PfamPF001702.0E-63491IPR004827Basic-leucine zipper domain
CDDcd147021.37E-1635107No hitNo description
PROSITE patternPS0003603752IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MNIPEMRSSM TGYLSPVLTT SIPSSGSGSD PAERKRKRLE SNRESARRSR MKKRELLDRL  60
NVQLEQLRKV NRQTAIELGV TTEHCVKTEA ENSVMRAQVT ELNQRLNSLN QIIASAESYS  120
SAAGGFGMET APSAAAGGFG MKTGYSAAGG FGMKTGYSPA GAFGTETAPS AAGGFGMKTD  180
YSAAGGFGMK TGYSPAGAFG TETAPSAAGG FGMKTGYSAA GGFGMKTGYS AAGGLGKETA  240
PSATGGFGMK TGYSAAGAFG TETAPSAAGG FGMKTGCSAA GGFGTETAPS AAGGFGMKTG  300
HSAAGAFGTE TGYSAAGGFG IATAPSTAGV FGMETAPSAA ASLGKETYPS VAGGFGMEAG  360
YSAGAGGFGM ETGQGGGGGV TDYGGGGGGL YDGAMNPFNP GFYDQPPNMA DLLNCW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654RRSRMKKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00014.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442788.11e-152PREDICTED: bZIP transcription factor 44 isoform X1
TrEMBLA0A397YVS41e-109A0A397YVS4_BRACM; Uncharacterized protein
STRINGBra015847.1-P5e-96(Brassica rapa)
STRINGBo6g119550.14e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2710033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-33basic leucine-zipper 44