PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00010.1_g00031.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 446aa    MW: 50314.3 Da    PI: 5.386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00010.1_g00031.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.13e-48221472128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF++r kky++g++++r+tk gyWk t
  Rsa1.0_00010.1_g00031.1  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCSRGKKYPHGSQNRRTTKMGYWKVT 106
                              69************************999.99***************778888999****************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              gk+++v+s +++++g+k+tLvf+ grapkg++t+W+mhey +
  Rsa1.0_00010.1_g00031.1 107 GKERDVKS-SSQVIGTKRTLVFHIGRAPKGQRTEWLMHEYCM 147
                              ********.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-5411169IPR003441NAC domain
PROSITE profilePS5100550.67221170IPR003441NAC domain
PfamPF023655.3E-2423146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEAVAVGVSK DMAASVEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN  60
FEPWDLPDKS IVKSDTEWFF FCSRGKKYPH GSQNRRTTKM GYWKVTGKER DVKSSSQVIG  120
TKRTLVFHIG RAPKGQRTEW LMHEYCMKGG VFMVHYSKDD ALVVCRLRRN REFRTYTSQK  180
APLEPDLAAD MHMILQNGDA NSGSPSDWES MVDFYLAGES WDNHVTETPE NLQVEAEEDF  240
YGDILRDDII NLDEVVMMRK APNEVPTLES ASMAIRILPL PNMIDRQMAS FLEQRLSQEN  300
KRKGSSGTEP LSSCFIGLYS IKTVNRARWD VIIGVVVLTF SYATAKSYSI IHPGNMNQQE  360
TASTLKLDLK LDILDSSLPI ESPSSSLCSE EAEGGEGVTK SMVVVGCPNC IMYIIMSLDN  420
NPRCPRCNSQ VLLDFLTRND SKKSIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-392317122169NAC domain-containing protein 19
3swm_B2e-392317122169NAC domain-containing protein 19
3swm_C2e-392317122169NAC domain-containing protein 19
3swm_D2e-392317122169NAC domain-containing protein 19
3swp_A2e-392317122169NAC domain-containing protein 19
3swp_B2e-392317122169NAC domain-containing protein 19
3swp_C2e-392317122169NAC domain-containing protein 19
3swp_D2e-392317122169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00010.1_g00031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444205.10.0PREDICTED: NAC domain-containing protein 89-like
RefseqXP_018445775.10.0PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A3P6DD720.0A0A3P6DD72_BRACM; Uncharacterized protein
STRINGBra002403.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]