PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00008.1_g00055.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 478aa MW: 55083.3 Da PI: 5.4365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00008.1_g00055.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.1	1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWk Rsa1.0_00008.1_g00055.1 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKaLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWK 90 79**************************.99***********6335667999************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v +++++g+kktLv+y+grap+g +t Wvmheyrl Rsa1.0_00008.1_g00055.1 91 ATGKDRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 *****9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.935	6	157	IPR003441	NAC domain
Pfam	PF02365	7.0E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKALLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETQCEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHGMSNVSG 180 NSSFDACSDL EISSTTHQVQ NAFQPRFGNR HFNSNAMTSN EDWSQYYGSS YAPFPTPFKV 240 NNEIECSMLQ HNMSLPPLRV ENSAVSNCDF FTSMTHNNNH GVLEDFSFAA SGSNHYNSVG 300 DQVIHIGNYD EPPLMMSNHN MNQGYMEEQK IISSLDNNDQ DLGFQGDNTN DNINIDDFFS 360 FDVYNEDNVN QVEGKEDLIT NETLDSSGFE VVEEEIRFNN QMLISTYQTT KILYHQVVPS 420 HTLKVHINPI NHNVEERTLF IEEDNDSWLQ RAEKITKTKL TLVGVMAQQC YKYLAVFF

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKALLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETQCEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHGMSNVSG  180
NSSFDACSDL EISSTTHQVQ NAFQPRFGNR HFNSNAMTSN EDWSQYYGSS YAPFPTPFKV  240
NNEIECSMLQ HNMSLPPLRV ENSAVSNCDF FTSMTHNNNH GVLEDFSFAA SGSNHYNSVG  300
DQVIHIGNYD EPPLMMSNHN MNQGYMEEQK IISSLDNNDQ DLGFQGDNTN DNINIDDFFS  360
FDVYNEDNVN QVEGKEDLIT NETLDSSGFE VVEEEIRFNN QMLISTYQTT KILYHQVVPS  420
HTLKVHINPI NHNVEERTLF IEEDNDSWLQ RAEKITKTKL TLVGVMAQQC YKYLAVFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-55	1	157	15	168	NAC domain-containing protein 19
3swm_B	1e-55	1	157	15	168	NAC domain-containing protein 19
3swm_C	1e-55	1	157	15	168	NAC domain-containing protein 19
3swm_D	1e-55	1	157	15	168	NAC domain-containing protein 19
3swp_A	1e-55	1	157	15	168	NAC domain-containing protein 19
3swp_B	1e-55	1	157	15	168	NAC domain-containing protein 19
3swp_C	1e-55	1	157	15	168	NAC domain-containing protein 19
3swp_D	1e-55	1	157	15	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00329	DAP	Transfer from AT3G03200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00008.1_g00055.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119137.1	0.0	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A398AZS7	0.0	A0A398AZS7_BRACM; Uncharacterized protein
STRING	Bra021366.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]