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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Rsa1.0_00008.1_g00039.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | HSF | ||||||||
| Protein Properties | Length: 2561aa MW: 288751 Da PI: 8.4397 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 112.5 | 2.8e-35 | 2128 | 2219 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85
Fl+k+y++++d++++e++sws+ +nsfvv++ ef+k+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++
Rsa1.0_00008.1_g00039.1 2128 FLSKTYDMVDDPSTDEVVSWSSGSNSFVVWNVPEFSKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEG 2202
9****************************************************************999.........******* PP
XXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 86 Fkkgkkellekikrkks 102
F kg+k+ll++i r+k
Rsa1.0_00008.1_g00039.1 2203 FLKGQKQLLKSIIRRKP 2219
************99985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF11960 | 7.5E-23 | 10 | 67 | IPR021863 | Fatty acid desaturase, N-terminal |
| Pfam | PF14111 | 8.6E-28 | 159 | 287 | IPR025558 | Domain of unknown function DUF4283 |
| Pfam | PF14392 | 1.3E-6 | 301 | 344 | IPR025836 | Zinc knuckle CX2CX4HX4C |
| Pfam | PF03372 | 6.2E-8 | 752 | 961 | IPR005135 | Endonuclease/exonuclease/phosphatase |
| Gene3D | G3DSA:3.60.10.10 | 6.7E-12 | 758 | 965 | IPR005135 | Endonuclease/exonuclease/phosphatase |
| SuperFamily | SSF56219 | 2.09E-23 | 759 | 965 | IPR005135 | Endonuclease/exonuclease/phosphatase |
| PROSITE profile | PS50878 | 12.258 | 1209 | 1500 | IPR000477 | Reverse transcriptase domain |
| CDD | cd01650 | 1.43E-52 | 1227 | 1499 | No hit | No description |
| Pfam | PF00078 | 2.4E-38 | 1229 | 1469 | IPR000477 | Reverse transcriptase domain |
| Pfam | PF13966 | 5.1E-18 | 1756 | 1845 | IPR026960 | Reverse transcriptase zinc-binding domain |
| Gene3D | G3DSA:3.30.420.10 | 1.1E-8 | 1951 | 2080 | IPR012337 | Ribonuclease H-like domain |
| SuperFamily | SSF53098 | 1.2E-11 | 1953 | 2079 | IPR012337 | Ribonuclease H-like domain |
| CDD | cd06222 | 2.22E-21 | 1955 | 2074 | No hit | No description |
| Pfam | PF13456 | 4.2E-23 | 1957 | 2075 | No hit | No description |
| PROSITE profile | PS50879 | 9.389 | 1974 | 2078 | IPR002156 | Ribonuclease H domain |
| Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 2122 | 2212 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| SMART | SM00415 | 1.0E-57 | 2124 | 2217 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| SuperFamily | SSF46785 | 5.03E-33 | 2124 | 2217 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Pfam | PF00447 | 6.2E-30 | 2128 | 2217 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PRINTS | PR00056 | 9.5E-18 | 2128 | 2151 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PRINTS | PR00056 | 9.5E-18 | 2166 | 2178 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PROSITE pattern | PS00434 | 0 | 2167 | 2191 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PRINTS | PR00056 | 9.5E-18 | 2179 | 2191 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0055114 | Biological Process | oxidation-reduction process | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity | ||||
| GO:0016717 | Molecular Function | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2561 aa Download sequence Send to blast |
MVVAMDQRTN VNGDARARKE EGFDPSAQPP FKIGDIRAAI PKHCWVKSPL RSMSYVVRDI 60 CAVAALAIAA VYIDSWFLWP LYWVAQGTLF WAIFVLGHDC GHGSFSDIPL LNSVVGHILH 120 SFILVPYHGW FTEEEKGKGI QTEYQDSTVK RIKAPVLDTT RLIQDNALTL IGRVTNPREQ 180 RIWALIPSLP RKWNLQGRAV GSDLGNNCFQ FRFEREDDLQ RVLDNRPYHF AYWMVILQRW 240 EPVISPTFPS QIPFWIRIKG LPLHYWHEAM VRSVGQELGV YVEQELTKTT ARVRVLVDGL 300 KPLVVQPIIE YESGEESTIY LEYERLENHC SYCFSLSHLS DYCLKKEPSI TRQGEGNGTQ 360 MSKPRQVEDL EAPSDRPRSQ REEYDSRRSQ RVTWQRRNSQ DASQLKENDI PRSERVEKAP 420 QLFHQRLDRY RKAYGERVSS RHTRNPPPPS RTRSPTEGVG HSRDKEHVEN QQIYTSPAYV 480 KNRDHQNRRE RPAFSANPRK EISQWRVKPT TMVERQSQEP TIQEAVTPIS ANVNRHPLQN 540 TSVHIPTNEE VMEELHQTTL QYLSCIDPTE AAARRQRVLQ GDSQGQMEQV AAGIIEAATR 600 AAEITVHQNA VRSEENLPHQ NDEASSIIGD QTTRSPEQEI RSSGLHSYAA FLRSPIENLP 660 TNGALRNPPT DAVIPQGQKR KRTTPARLRS AIVSPKHPQG ASSKKRLRAL IRTSPGGATR 720 SSGRDGTKRH TPDRNSDVVG PSRSSNQPRT NVFPAIQRLQ EINRVNAPDI FFLMETKNPT 780 EFVTKELDWL LMETYIVPPH SPGGGGLFLA WRKEVEMTIN SATNNYIDTN ITYKGASFQA 840 TFVYGEPDHT KRQAVWSEIS SLKNVNGGAW FLTGDFNEIT DNSEKQGGPA RAEGTFCAFR 900 TFLSQNDLFD LKHAGNFLSW RGKRSSHVVH CRLDRAISNT DWTEKFPSCR SVYLNYEGSD 960 HRPLLSFCDT TRKKGHRIFR YDRRLKGNEE VEKLISDIWE GFPNLTVESR LAMCRKAISK 1020 WCRTAQVNSQ KLIASLKLQL EKAMSDSREE ETKIQEINTN LLKAYQAEEA FWKQRSRQLW 1080 LSLGDANTGY FHAVTKGRRA KNKLTIIEDE AGKPWHEEEQ IARVISQYYH DLFTAVPFDG 1140 GPTISKALSP CITQEMNETL ISNPTDEEIK RALFAIHADK APGPDGFSAS FFQSNWSVVG 1200 PATVTEVQMF FNSAELPASM NTTHVRLIPK VTGAKTVADY RPIALSNVFY KIISKLISLR 1260 LKPILGSVIS ENQSAFIPGR VITDNVLITH EVLHYLKASQ AEKKCPMAVK TDMSKAYDRM 1320 EWDFIEQVLQ RLGFHEKLIK LIMQCITTVS YSFLINESVY GNVIPQRGIR QGDPMSPYIF 1380 ILCGEVLTGL CKEAERNGSL PGAERNGSLP GVRVARGSPR INHLLFADDT MFFCYSTPTS 1440 CKTLKDILLE YERASGQKIN TNKSSITFSS KTPPMVKDNA KLLLDITKEG GVGKYLGLPE 1500 HFGRRKRDLF TSIVDKIRQR ALSWSTKCLS KAGKMTMIKS VLTAMPSYSM SCFQIPISLC 1560 KRIQSVLTRF WWDGNDEKKK LCWVSWANLS KPKAAGGMGF RDVQVFNQAL LAKNAWRIVT 1620 EPSCLLSRVL RGKYCHKEAF LDVEPSSACS HGWRSVLHGR DLLKQNLGKV IGNGLNTKIW 1680 QDAWISLDTN IKPYGPITED ASDLRVSDLL TTDLKWNTTR IEELLPEFAA KILCLRPSQM 1740 GVEDAFIWQP LNTGIYSTKS GYHSAMTPNE SIIPSSNVDW YKDVWNEKCT PKLKVFVWSI 1800 LQRAFPIGEN LQRRGFNASV TCPRCGNQES ATHLFFSCPY AKKVWSLLPL ASTAHLADFA 1860 SFESAIATFH QMPCLPPSGI TTNILPWVCW QLWTSRNHLI FENRKFSEEE VALRSITTAR 1920 EWITAQETAK ISQPMIHRGS NSLRREEEDS NITKCFTDAA YDKETRQAGL GWIFSNRSAL 1980 TCKGSSFQTY VNSPLMAEAL ACRSSLLHAT SIGLRDLRIF SDNQSLVRAI NSKLASKEIF 2040 GILADIKNLA ASFDSISFSH IARSLNVEAD TLAKAVLRDP SSALDFSLSI SASPLWAISE 2100 KEMGSIPESV PTANSSTTTV VMSSIPPFLS KTYDMVDDPS TDEVVSWSSG SNSFVVWNVP 2160 EFSKQFLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLKGQKQL LKSIIRRKPP 2220 QVQPPQQPQV QHSSVGACVE VGKFGLEEEV ERLQRDKNVL MQELVRLRQQ QQVTEHHLQH 2280 VGQKVHVMEQ RQQQMMSFLA KAVQSPGFLN QFAQQQSHNE GSQQHISETN KKRRLPVEDQ 2340 KNSGSNGLNG LSRQIVRYQS SMNESANSML QQIHNMSNNN NHGGFLLGDV PNPNLSDNGS 2400 SSNGPSGVAF ADVSSNPAMT HHNSPCATNQ VLEETNLPYP QADLLVPNQG SGSPSPDLVG 2460 CETDNGECLD PIMAVLDGSM MLETDNELLP GGVQDSLWEQ FFGESSGIGD SDELVSGSVD 2520 NELIMEQLEL QPNLRNVLSN NQQMNHLTEQ MGLLTSDALR K |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5d5u_B | 3e-25 | 2123 | 2217 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 3e-25 | 2123 | 2217 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 3e-25 | 2123 | 2217 | 24 | 129 | Heat shock factor protein 1 |
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00328 | DAP | Transfer from AT3G02990 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Rsa1.0_00008.1_g00039.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BNALINDES | 1e-143 | L01418.1 Brassica napa linoleate desaturase (fad3) mRNA, complete cds. | |||
| GenBank | JX866748 | 1e-143 | JX866748.1 Brassica oleracea isolate Albo-UA fatty acid desaturase 3-2 mRNA, complete cds. | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2 | 2 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G02990.1 | 0.0 | heat shock transcription factor A1E | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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