PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00006.1_g00064.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

VOZ

Protein Properties

Length: 476aa MW: 53221 Da PI: 5.7056

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00006.1_g00064.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	428	1.4e-131	202	419	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaata 86 p+ saflgpkcalwdc+rpaqg +w++dycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaat+ Rsa1.0_00006.1_g00064.1 202 PQLSAFLGPKCALWDCPRPAQGLDWFKDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATT 287 6779******************************************************************************** PP VOZ 87 kspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyey 172 kspwna+elfdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m efgglkrsyymdpqp+++fewhlyey Rsa1.0_00006.1_g00064.1 288 KSPWNAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMSEFGGLKRSYYMDPQPLHHFEWHLYEY 373 ********************************************************************************** PP VOZ 173 eineldalalyrlelkl.vdekksakgkvskdsladlqkklgrlta 217 ei+++da+alyrlelk+ vd+kk++kgkvs++s+adlqk++ rlta Rsa1.0_00006.1_g00064.1 374 EISKCDACALYRLELKVvVDGKKNSKGKVSTESVADLQKQMRRLTA 419 ************7369**********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MTGKRSKTTC RSASHKLFKD KAKNRVDDLQ GMLLDLQYAR KESSATDVIL LEEQVNLMLC 60 EWKSELNEPS PASSAQQVIL IYYLVSFLLI LGQGGTLWSF SSDICRLLQL CDEEDDATSK 120 LAAPKPEPTD QNLEPYVPLA DHCKDPSSVV GNNFDGTGHL DYNHYDLQQE FEPSFNGGFN 180 DRLGYGVEGS LDISAFIPSI CPQLSAFLGP KCALWDCPRP AQGLDWFKDY CSSFHAALAF 240 NEGPPGMNPV VRPGGIGLKD GLLFAALSAK AGGKDVGIPE CEGAATTKSP WNAPELFDLT 300 VLESETLREW LFFDKPRRAF ESGNRKQRSL PDYNGRGWHE SRKQIMSEFG GLKRSYYMDP 360 QPLHHFEWHL YEYEISKCDA CALYRLELKV VVDGKKNSKG KVSTESVADL QKQMRRLTAE 420 FPQENSNNKR CNKGKPKVNT KVATRNVQNT VEQGNDYGVG EEFNYLVGNP TGYYIA

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MTGKRSKTTC RSASHKLFKD KAKNRVDDLQ GMLLDLQYAR KESSATDVIL LEEQVNLMLC  60
EWKSELNEPS PASSAQQVIL IYYLVSFLLI LGQGGTLWSF SSDICRLLQL CDEEDDATSK  120
LAAPKPEPTD QNLEPYVPLA DHCKDPSSVV GNNFDGTGHL DYNHYDLQQE FEPSFNGGFN  180
DRLGYGVEGS LDISAFIPSI CPQLSAFLGP KCALWDCPRP AQGLDWFKDY CSSFHAALAF  240
NEGPPGMNPV VRPGGIGLKD GLLFAALSAK AGGKDVGIPE CEGAATTKSP WNAPELFDLT  300
VLESETLREW LFFDKPRRAF ESGNRKQRSL PDYNGRGWHE SRKQIMSEFG GLKRSYYMDP  360
QPLHHFEWHL YEYEISKCDA CALYRLELKV VVDGKKNSKG KVSTESVADL QKQMRRLTAE  420
FPQENSNNKR CNKGKPKVNT KVATRNVQNT VEQGNDYGVG EEFNYLVGNP TGYYIA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00006.1_g00064.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125256	0.0	AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBank	AK227014	0.0	AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBank	AK317006	0.0	AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBank	BT020261	0.0	BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018463741.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018463742.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A3P6C9N3	0.0	A0A3P6C9N3_BRACM; Uncharacterized protein
STRING	Bo3g143600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]