PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9906_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 165aa MW: 19302.2 Da PI: 4.0223 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.5 | 6.9e-12 | 9 | 106 | 36 | 128 |
NAM 36 ev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy..........kgrapkgektdW 121 e+ di++ +P+dLp + +e++wyf++++ ++ t +n +++Wk+ g+++ vl+ ++lvg+k++++f ++ ++ + +W RrC9906_p1 9 EChDIFSRHPRDLPG--YPRETHWYFYCRKLDSQVT---PNS---HSFWKQIGEETGVLDPknYDTLVGIKRIFTFVdheeepndilLSDEDEPPQYNW 99 4569**********4..34789******99886543...444...589***********98555567**********766655554436777888**** PP NAM 122 vmheyrl 128 +m+e++l RrC9906_p1 100 FMDEFSL 106 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.533 | 1 | 123 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-17 | 11 | 124 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-6 | 18 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MGSPIVPEEC HDIFSRHPRD LPGYPRETHW YFYCRKLDSQ VTPNSHSFWK QIGEETGVLD 60 PKNYDTLVGI KRIFTFVDHE EEPNDILLSD EDEPPQYNWF MDEFSLPLTI SETDWVLCHV 120 FHKNIEPESE EEEGENEEKE TVEAESLDLL IEKDENVLPP SPSPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232543 | 1e-170 | AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444528.1 | 1e-100 | PREDICTED: NAC domain-containing protein 104-like | ||||
TrEMBL | A0A078FEP1 | 9e-88 | A0A078FEP1_BRANA; BnaC06g13440D protein | ||||
TrEMBL | A0A0D3CT73 | 9e-88 | A0A0D3CT73_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g064960.1 | 2e-88 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 3e-60 | NAC family protein |