PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9878_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 457aa    MW: 50772.5 Da    PI: 4.8181
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9878_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k+ll++i 
    RrC9878_p1  26 FLSKTYDMVDDPSTDEVVSWSSGSNSFVVWNVPEFSKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQKQLLKSII 113
                   9****************************************************************999.........*******************9 PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    RrC9878_p1 114 RRKP 117
                   9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3820110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-3422115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGSIPESVPT ANSSTTTVVM SSIPPFLSKT YDMVDDPSTD EVVSWSSGSN SFVVWNVPEF  60
SKQFLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLKGQKQLLK SIIRRKPPQV  120
QPPQQPQVQH SSVGACVEVG KFGLEEEVER LQRDKNVLMQ ELVRLRQQQQ VTEHHLQHVG  180
QKVHVMEQRQ QQMMSFLAKA VQSPGFLNQF AQQSNNEGSQ QHISETNKKR RLPVEDQKNS  240
GSNGLNGLSR QIVRYQSSMN ESANSMLQQI HNMSNNNNHG GFLLGDVPNP NLSDNGSSSN  300
GPSGVAFADV SSNPAMTHHN SPCATNQVLE ETNMPYPQAD LLVPNQGSGS PSPDLVGCET  360
DNGECLDPIM AVLDGSMMLE TDNELLPGVQ DSLWEQFFGE TSGIGDSDEL VSGSVDNELI  420
MEQLELQPNL RNVLSNNQQM NHLTEQMGLL TSDALRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262111524129Heat shock factor protein 1
5d5v_B2e-262111524129Heat shock factor protein 1
5d5v_D2e-262111524129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434561.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_018434562.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLM4DXY50.0M4DXY5_BRARP; Uncharacterized protein
STRINGBra021381.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]