PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9803_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 313aa    MW: 36192.5 Da    PI: 7.3542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9803_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.91.9e-10511811128
         NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvf 108
                 de ++ +yLk+ + +     ++++k++d+++ +P++       + +++ f + + +++a g+      + g W+   +dk ++++ +gel g kk+L f
  RrC9803_p2   5 DELILLRYLKPMIVDGASWPQHFLKDADVFNKNPRKVF-----NPEDTVFVIVNPRTEACGNTDGC--DYGSWRIMARDKLIKNEeTGELLGFKKILKF 96 
                 5556789****988877555588**************5.....34566777777777777655554..689***********99878899********* PP

         NAM 109 y..kgrapkgektdWvmheyrl 128
                    k ++ +  k +Wvm+eyrl
  RrC9803_p2  97 CvkKTTRAREYKRSWVMEEYRL 118
                 9653444555799*******98 PP
2NAM21.75.7e-071702969128
         NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                 P++ee   +yL++ + +++ e      + d+y ++P+ L  p+      e+ +  F++r++++   +      ++g W+    d+++ s  ge+ g ++
  RrC9803_p2 170 PNQEEDGAYYLRNLIGHEN-EW-PSYVTNDVYCMHPSALvdPRqDQMFAESGLCIFANRKEASGYTDG----CDRGCWRIMVGDEPIPSIMGETFGYRR 262
                 6677777899999888877.33.235677**********43322222356688999988776543322....3569*********************** PP

         NAM 105 tLvfy........kgrapkge..ktdWvmheyrl 128
                 ++ f           ++p+ge    +W+m+eyrl
  RrC9803_p2 263 VFKFCgeddkakhFYTDPNGEvvLLNWIMEEYRL 296
                 ****976665543124455543378*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.4231136IPR003441NAC domain
SuperFamilySSF1019412.88E-215134IPR003441NAC domain
PfamPF023651.3E-65118IPR003441NAC domain
SuperFamilySSF1019412.88E-19161311IPR003441NAC domain
PROSITE profilePS5100515.365162312IPR003441NAC domain
PfamPF023652.6E-4170296IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGAGDELILL RYLKPMIVDG ASWPQHFLKD ADVFNKNPRK VFNPEDTVFV IVNPRTEACG  60
NTDGCDYGSW RIMARDKLIK NEETGELLGF KKILKFCVKK TTRAREYKRS WVMEEYRLPS  120
KWNPKQDHVI CKIRLLFQTE IGFLLSKHFS YSSAPLPATQ SLPDYGYGLP NQEEDGAYYL  180
RNLIGHENEW PSYVTNDVYC MHPSALVDPR QDQMFAESGL CIFANRKEAS GYTDGCDRGC  240
WRIMVGDEPI PSIMGETFGY RRVFKFCGED DKAKHFYTDP NGEVVLLNWI MEEYRLAGEV  300
MKNKVLCVIK LRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467294.10.0PREDICTED: uncharacterized protein LOC108838937
TrEMBLA0A0D3EBI90.0A0A0D3EBI9_BRAOL; Uncharacterized protein
STRINGBo9g122180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-121NAC family protein