PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9759_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 231aa MW: 26113.9 Da PI: 8.6067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9759_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	102	125	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ L +H t H RrC9759_p3 102 WKCGYCSKSFNEEKFLDQHFATrH 125 58*****************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.787	102	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGRLKESSPV ILLLLLFPLL LHQSLTKVLG ESESTRSGSN DAPEIHCSRE RSRAAWQIIQ 60 DYLTPFVERE KYKIPSTCRL HPDNDLYRDQ EQHKVHVDLY EWKCGYCSKS FNEEKFLDQH 120 FATRHHNLLN TTGTKCLADL CGALHCDFVL SSSSSKKGKS KCNPAAAAKN RHLCESLANT 180 CFPVSQGPAA SRLHEHFLRQ FCDAHTCTGK NKPFPRGGKV KICQVIVVTY L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458194.1	1e-139	PREDICTED: uncharacterized protein LOC108829038
TrEMBL	A0A0D3AYG8	1e-134	A0A0D3AYG8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D878	1e-134	A0A3P6D878_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo2g165480.1	1e-135	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4371	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-118	C2H2-like zinc finger protein