PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9757_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRF
Protein Properties Length: 263aa    MW: 30099.9 Da    PI: 8.6923
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9757_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.32.7e-2378119142
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                 daepgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rs+++
  RrC9757_p1  78 DAEPGRCRRTDGKKWRCSKDASPDSKYCERHMHRGKNRSSRK 119
                 79*************************************985 PP
2QLQ59.97.4e-21641237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++
  RrC9757_p1  6 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIRR 41
                8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.5E-14541IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.646641IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-15640IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.30578122IPR014977WRC domain
PfamPF088793.3E-1979119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MATRIPFTES QWEELENQAL VFKYLAANVP VPPHLLFLIR RSFLFSSSAS SSSSSSSNFF  60
SPHFGWNVYE MGMGRKRDAE PGRCRRTDGK KWRCSKDASP DSKYCERHMH RGKNRSSRKP  120
LPPPLPPSPP PPQLYVPSTP SIFLDFPLSS SRVRSKRTGY MDDFFSIEPS GSIKSSSGLA  180
MEDDVGCFRY ESLKQREKQS DRSCFILGTD LGTLESPLMV EEKLGQRDDK DYELEEEQRS  240
QRFYKFLDEW PSSKSTVSTS LFI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489734.10.0PREDICTED: growth-regulating factor 6
SwissprotQ9ZQ121e-108GRF6_ARATH; Growth-regulating factor 6
TrEMBLA0A397YI871e-141A0A397YI87_BRACM; Uncharacterized protein
TrEMBLM4DFB21e-141M4DFB2_BRARP; Uncharacterized protein
STRINGBra015184.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.17e-91growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]