PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC958_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 346aa    MW: 38924.7 Da    PI: 4.382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC958_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1869119155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  RrC958_p2  69 CRFRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAACAYDEAARVMYG 119
                689*****99.**********8...2.58**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1169119IPR001471AP2/ERF domain
CDDcd000183.03E-3069127No hitNo description
SuperFamilySSF541712.75E-2070128IPR016177DNA-binding domain
PROSITE profilePS5103221.77370127IPR001471AP2/ERF domain
SMARTSM003801.1E-3570133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3070127IPR001471AP2/ERF domain
PRINTSPR003671.1E-97182IPR001471AP2/ERF domain
PRINTSPR003671.1E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSVYEQTGTV TSSKKRKSRS RADGKTVADR LKQWKDSNGG ENQQRRIVHA KGSKKGCMRG  60
KGGPENTNCR FRGVRQRVWG KWVAEIREPN RVSRLWLGTF PTAEEAACAY DEAARVMYGP  120
LARLNFPGSV GSEFTSTSSQ SEVCTVEDKV VIGVDVCVKQ EDADCESKPV SQIVDVKQSY  180
GDSRLQDSSV DEQRGVVNSR LSSYLLDEFE QDYQSRLTKE LEKPKEEEEV IQPQQEPEPE  240
LTLADYGWTI DMQNEQGFWD QDDLFDVDEL LGDLDVDLVT GSDPSQNQNQ EQVHPGGNDS  300
HPFLLEPHDD PCQNQSQVQP SGDDPHPLEL EPHNGHEFFD LGFLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1771127360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1671132668ATERF1
3gcc_A1e-1671132668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486729.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821338e-95DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0D3BAM91e-168A0A0D3BAM9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B1U41e-168A0A3P6B1U4_BRAOL; Uncharacterized protein
STRINGBo3g063910.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.15e-72DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]