PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9511_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 257aa MW: 29391.5 Da PI: 5.8899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9511_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	84	125	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L+ l+P++ +K + a+i+ +A++YIk+L RrC9511_p3 84 TERERRVHFNDRFSILKNLIPNP-----TKSDRASIVGEAIDYIKEL 125 59*******************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.757	76	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-11	84	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-9	84	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	84	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-10	85	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MCLYHKSQRK EETFMDVEKG RNIYEEMPCF DPNTSASVTA ESSCFSQVQP PQILVAGSTS 60 NSNISLDVEA SPTPLHQFHI NPPTERERRV HFNDRFSILK NLIPNPTKSD RASIVGEAID 120 YIKELLRTIE EFKMLLEKKK LEEFRSMKKA KTDGEEEEED NRKSKLTEVD VRIIDDEVTI 180 KVVQKKKINC LLFTSKALDQ LKLDLHHVAG RQIGEHYSFL FNAKICEGSC VYASGIADTV 240 MEVLEKHYME AVPTNGY

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	7e-96	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	7e-96	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	7e-96	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	7e-96	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478258.1	1e-172	PREDICTED: transcription factor bHLH10-like
Swissprot	Q84TK1	2e-91	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A078FSY8	2e-95	A0A078FSY8_BRANA; BnaC04g42050D protein
TrEMBL	A0A0D3C3D5	2e-95	A0A0D3C3D5_BRAOL; Uncharacterized protein
TrEMBL	A0A397ZM89	1e-95	A0A397ZM89_BRACM; Uncharacterized protein
TrEMBL	M4DYW4	2e-95	M4DYW4_BRARP; Uncharacterized protein
STRING	Bra021711.1-P	3e-96	(Brassica rapa)
STRING	Bo4g176070.1	4e-96	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	2e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]