PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9389_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 367aa    MW: 40678.2 Da    PI: 7.8672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9389_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-0780105127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ykt+ C  f + GtC  Gd C+FaHg+
  RrC9389_p1  80 YKTRMCAKFKA-GTCMNGDPCNFAHGM 105
                 9**********.*************95 PP
2zf-CCCH17.76.4e-061721861125
                 GTS.--TTTTT-SS-S CS
     zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                   G +C+yGdrC+F H
  RrC9389_p1 172 F-GeECPYGDRCNFVH 186
                 5.449*********** PP
3zf-CCCH36.95.9e-12251276127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ f   G+C++Gd+C+FaHg+
  RrC9389_p1 251 WKTRLCMKFEN-GQCPFGDNCHFAHGQ 276
                 8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-878110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1478112IPR000571Zinc finger, CCCH-type
SMARTSM003560.005179105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06179106IPR000571Zinc finger, CCCH-type
SMARTSM003560.0095161188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6161187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361161189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-8163187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-9246279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-14248279IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7250276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901250277IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9251276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSHWNQN TQTNDSMPYP MMNNEQSESQ PSLKRPRLND DTTTSNNSSW  60
MAPPPSNTPP VNRGTAKIFY KTRMCAKFKA GTCMNGDPCN FAHGMEDLRQ PPSNWQEIVG  120
PPPVGDRGRE RERERERPSS SSSVSATNNN NSNWEDDQKI ILRMKLCRKF CFGEECPYGD  180
RCNFVHEDLS KFREESGKLR ESSVISVGTT DPASVENGGS AASHQVDVNR RGGVSVPAPL  240
NNAGVVKTVY WKTRLCMKFE NGQCPFGDNC HFAHGQAELL RHSVGNGEAV NGVGSLSKQT  300
VVSANEAFAM KPNAAQVVTA DSSGLNDEGR RQKCLLKWSD SKKINRIYGD WIDDLPVGQK  360
STKPVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126136RGRERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436880.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-173C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D3ACC30.0A0A0D3ACC3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3E60.0A0A3P6G3E6_BRAOL; Uncharacterized protein
STRINGBo1g114770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-168C3H family protein