PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC932_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 397aa    MW: 43092.4 Da    PI: 4.7809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC932_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011259281123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C  C+ksF++   L  H  +H
  RrC932_p6 259 HVCVTCNKSFTSYQALGGHRASH 281
                79**********99999998887 PP
2zf-C2H214.69.7e-05328350123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +C+ksF++   L  H r+H
  RrC932_p6 328 HVCDICHKSFPTGQALGGHKRRH 350
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-54671IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.67E-847114No hitNo description
PfamPF139121.5E-84971IPR007087Zinc finger, C2H2
SMARTSM003550.0334971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3234976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PROSITE profilePS501578.53892114IPR007087Zinc finger, C2H2
SMARTSM003557.592114IPR015880Zinc finger, C2H2-like
PfamPF139120.007794115IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-7258281No hitNo description
PfamPF139123.4E-10259283IPR007087Zinc finger, C2H2
SMARTSM003550.37259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556259286IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-7323350No hitNo description
PfamPF139123.9E-13328351IPR007087Zinc finger, C2H2
SMARTSM003550.043328350IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12328350IPR007087Zinc finger, C2H2
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MKHCYKDIEA EDDEKEQSIG LGEDEEEGDD GANSMDLEGD VEEEEEKNHI CSECGKWFKS  60
GKALGGHKRI HLLENQKLSM VRPKMMSGES EVDCCVCHKR FISMKALHGH MRFHPDRGWK  120
GVLPPPPPPP HPLGNSSSST LSIDDHVGEF TSSDYDDDDG YDNTDAKDQI DESDLKDNID  180
AKDLLLLATT AEAVNLDVAE TSDSPSVEEM MMNKKKRRRL SEIEKVSSLS STHDHHQLGD  240
DVAAAAAEEG GGGGAREKHV CVTCNKSFTS YQALGGHRAS HNKVKILENH QARANSDALL  300
LGTQAMITGL PSAQALNTSL SSSNNGDHVC DICHKSFPTG QALGGHKRRH WTGPVSSEAA  360
TSAPTAPAAG SSSQVTEAVQ EVNKFEFDLN ELPPNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218KKKRRR
2215219KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474202.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A0D3B3871e-164A0A0D3B387_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AUP91e-164A0A3P6AUP9_BRAOL; Uncharacterized protein
STRINGBo3g021160.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-114C2H2 family protein