PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC92_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 345aa    MW: 38310.1 Da    PI: 4.8469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC92_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-102753151055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  RrC92_p3 275 RKRRERINERLRILQHLVPNG-----TKVDISTMLEEAVHYVKFLQ 315
               9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-14266332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-12270330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-11271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-11274319No hitNo description
PfamPF000101.6E-7275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTEGGDQQG LYWSLGSNHN  60
HLTLMPEASS FGFSGESSSY SVGNRGYYAV VPPAVEEHTN GSMSFRMEDV TINTNSFLVG  120
EETSECDVEK YSSGKTLLPL ETVLESHDDE ESMLQSETTT DHHRSLTGSK KRSRATSTDK  180
NRRAKVGKRG QKSIEMTCDN NNGSGEEEEG EKVKRRKMMS RQNSSTTFCS EEESQCPSQD  240
VGGEEDEDAS KALNLNGKTR ASRGAATDPQ SLYARKRRER INERLRILQH LVPNGTKVDI  300
STMLEEAVHY VKFLQLQIKL LSSDDQWMYA PIAFNGMDIG LNLPR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482168.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A0D3A2520.0A0A0D3A252_BRAOL; Uncharacterized protein
STRINGBo1g007780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-171ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]