PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC9281_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 392aa MW: 44554.5 Da PI: 7.3987 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.8e-09 | 328 | 383 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 r+ WT+eE+e l+ +vk++ + W++I ++ ++Rt+ ++k++w++ RrC9281_p1 328 RLFWTPEEEEMLKVGVKKFSAEakknmPWRKILEMGEkvfhETRTPADLKDKWRNM 383 678*****************************99877*****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.2E-7 | 87 | 139 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 7.2E-5 | 88 | 134 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd15489 | 2.61E-5 | 89 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-9 | 323 | 386 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.258 | 323 | 384 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.86E-10 | 326 | 384 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-4 | 327 | 386 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-6 | 331 | 383 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.63E-10 | 331 | 384 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MRSKSFAVRS RPHRASRNSL DPYPSSPASL PGEANERFAS GVRHCDSGEA ADVETVPDSF 60 DERDVPSKKR HCLGASGTAR GGRLNLEACI VCDVSDERVS RCSGTDCFIW FHGKCLNPEL 120 SNSEDLAKTY CPYCWLRVLM MKHESVREKK AVGAENEERK SKDRSVDRTD VVRDQELRGE 180 NGVCSSEKEQ LQVEKDSDWL REEELPLTEE IDGQPQEDIE KFQNAEEDKV DGKTTSDQTT 240 GARGQGDVSG KEQDQIQQNE RPRRRRQLIL SDSEISSDES AKDRNKGNVA SPSGTMKNQQ 300 RKHSSTTNVV KSRTVSDTTY FNREQRKRLF WTPEEEEMLK VGVKKFSAEA KKNMPWRKIL 360 EMGEKVFHET RTPADLKDKW RNMMGGRGKK TN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493735 | 3e-56 | AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780. | |||
GenBank | AK117877 | 3e-56 | AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14. | |||
GenBank | AY519543 | 3e-56 | AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483319.1 | 0.0 | PREDICTED: trichohyalin-like | ||||
TrEMBL | A0A397Z302 | 0.0 | A0A397Z302_BRACM; Uncharacterized protein | ||||
STRING | Bra037494.1-P | 1e-159 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7660 | 13 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58340.2 | 4e-08 | MYB_related family protein |