PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9240_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31115 Da    PI: 8.0122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9240_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18126180256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tk+q   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  RrC9240_p1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 180
                 788899***********************************************98 PP
2HD-ZIP_I/II122.52e-39126215191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
   RrC9240_p1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 215
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-16115176IPR009057Homeodomain-like
PROSITE profilePS5007116.811122182IPR001356Homeobox domain
SuperFamilySSF466893.46E-18124190IPR009057Homeodomain-like
SMARTSM003895.6E-15124186IPR001356Homeobox domain
CDDcd000861.28E-15126183No hitNo description
PfamPF000463.1E-15126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003401.1E-25182225IPR003106Leucine zipper, homeobox-associated
PfamPF021834.5E-10182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYSHAIKK SSTTVEHHFY PSLTLSLSGE SYKTKTVEMT  60
DAGAGDQIFR QTSSHSGISS FSSGRVKRER EVFGGDVEEE AEETTERVVC SRVSDDHEDE  120
EGVSARKKLR LTKQQSALLE DSFKVHSTLN PKQKQVLARQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHMPPATL TMCPSCERLS  240
GGAAGGGGGG TVAVDGETGK GAFSIVTKPR FYSHFTNPSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412540.0AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447389.10.0PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466041e-159HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3N6QDA51e-177A0A3N6QDA5_BRACR; Uncharacterized protein
STRINGBra011786.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-160HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]