PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9178_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 226aa MW: 25089.9 Da PI: 10.7183

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9178_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	65	111	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN fe Lr+ lP++ K +Ka++L ++v+Y k+L RrC9178_p3 65 KKHSDAERRRRLRINCQFEALRTTLPNL-----IKQDKASVLIETVRYFKEL 111 68***********************9.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-12	53	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.24E-9	65	115	No hit	No description
Pfam	PF00010	3.4E-10	65	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-12	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-10	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	3.1E-5	138	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVLLQHLEQG MRPLSQRYNA TAYSTTMGRN FFTTGPASSN LFSSRGYSAN AKPKSKTESK 60 EVAAKKHSDA ERRRRLRINC QFEALRTTLP NLIKQDKASV LIETVRYFKE LKKLVNEIPT 120 TPSLEDSLRL GQCKNRDFAR VVFSCSDREG LMSEVAESMK AANAKAVRAE MMTVGGRTKC 180 VLFVQGVSGN EGLVKLKKAL KPVVNRKPEA KDNSSSGGSL MLPQQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018448366.1	1e-164	PREDICTED: transcription factor bHLH131
Swissprot	P0CB25	1e-106	BH131_ARATH; Transcription factor bHLH131
TrEMBL	A0A078ISV3	1e-140	A0A078ISV3_BRANA; BnaC03g61070D protein
TrEMBL	M4D2D5	1e-145	M4D2D5_BRARP; Uncharacterized protein
STRING	Bra010635.1-P	1e-145	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13939	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	1e-100	bHLH family protein