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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC9138_p2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
Trihelix |
| Protein Properties |
Length: 323aa MW: 35639.9 Da PI: 6.0401 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC9138_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 54.1 | 4.1e-17 | 71 | 158 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Liea e+ ++ ++g lk+++W+ev++++ r+ ++ ++ +qCk++++ ++k+yk +k+ ++ + s++++f++le
RrC9138_p2 71 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKLEKAKIASG-HDGPSNWVFFKKLE 158
7*************************************988888999**************************9.56667*******98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MEEEDSPKSP GDSSSPAPPS PPPILPTNND VTATKPPQSP SRNALAVPTP SVGGGNRNGR 60
SGGGGGGRDD CWSEEATKVL IEAWGERFSE PGKGTLKQQQ WKEVAEVVNE SRQCKYLKTD 120
VQCKNRIDTV KKKYKLEKAK IASGHDGPSN WVFFKKLESL IGGGNAKAPA PALATPMERR 180
QGKGTGLKRS SGDSMRWHFR KRSASETESE SDPEPDDSAE SLPPLVVSKR LKMDEESGVG 240
DVAKAIIGFT EAYEKAETAK LKLMMELEKE RMKFVKEMEL QRMQFLKTQM EITQNNQEEE 300
RSKRDGDDDD DNIKINGDGF RQL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
