PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 436aa    MW: 49023.9 Da    PI: 10.0963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07334383147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
         RrC8_p10 334 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 383
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864329388IPR017930Myb domain
SMARTSM007177.0E-7333386IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10334384IPR009057Homeodomain-like
SuperFamilySSF466891.17E-15335416IPR009057Homeodomain-like
CDDcd116608.93E-17335385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MESFNRSPNP NKDFLFGSTS GITYDSSEKF GTQELAYEEA KIHNGDCFRS DTNDKKPMLE  60
RLNCEPGVSR NKDKHPIHLL NGIENNDGEN FSARYTTKSF RSTLRVGDGR VKKFMSSKYC  120
KVSTNQKDTM VASSDLDLKP GYYSKKHCLK SLRSEKKFPI KKRRYFAGYT ASQSEETLAR  180
SSQLSMKLGI KSFKVPELFI DIPETATIGS LKRTVLEAVT TILEGGLRIG VHVRDDNKLL  240
VQTGISLDTL SDTLSFCLEP NPPQSTKPLC PKECLPSLGK HAKPSDSAES DLDSKPPTAP  300
FGAKPFYSRA LVPALNVVPP RKPKRSEVAQ RRIRRPFSVA EVEALVQAVE RLGTGRWRDV  360
KLRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLLA HAYWSQQQGK  420
QQLLEGPQNL ETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-593214234106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195351e-128AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450566.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A397YFP90.0A0A397YFP9_BRACM; Uncharacterized protein
STRINGBra030689.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2