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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC8_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
Dof |
Protein Properties |
Length: 334aa MW: 35908.7 Da PI: 9.7576 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC8_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 123 | 1e-38 | 79 | 137 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e alkcprCds ntkfCyynny+l+qPryfCkaCrryWt+GGalrnvPvGgg+rkn k+
RrC8_p1 79 EGALKCPRCDSINTKFCYYNNYNLTQPRYFCKACRRYWTRGGALRNVPVGGGCRKNSKK 137
5689****************************************************876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0003002 | Biological Process | regionalization |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009611 | Biological Process | response to wounding |
GO:0009625 | Biological Process | response to insect |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MVFSSNWSQP TNPNNHQHQL HENGSLVSDH GLLSHQLPPC PPNPNPNHHY AAATASGLPA 60 RLGGSMAERA RQAKAPPPEG ALKCPRCDSI NTKFCYYNNY NLTQPRYFCK ACRRYWTRGG 120 ALRNVPVGGG CRKNSKKGKN SNSKSSSSLS KQSSSTVNAP SSNSGQLRTN HQFPFLPTIH 180 NLTQLGGIGL NLAATSGNNQ GHQIGSSLMN DLGFLHVGNG RNIHDNNNNG SINNLMASAG 240 SLSHFALFDP TTGLHAFQNE GNILNNVGIS FSSTSMVDSR AYQAAPVKME EQPGLVNLSR 300 PVSGLTSPGN QTNQYLWNSS DFSGPSSNDH HQLL
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:16740150, ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:16740150}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ584285 | 0.0 | FJ584285.1 Brassica rapa subsp. pekinensis OBF binding protein 2 Dof1.1-2 gene, partial cds. |