PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8975_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 225aa    MW: 24731.5 Da    PI: 4.4916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8975_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-171868155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  RrC8975_p1 18 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-121868IPR001471AP2/ERF domain
PROSITE profilePS5103222.81976IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-211976IPR016177DNA-binding domain
SMARTSM003802.3E-341982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-311977IPR001471AP2/ERF domain
CDDcd000186.20E-322078No hitNo description
PRINTSPR003675.6E-102031IPR001471AP2/ERF domain
PRINTSPR003675.6E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVDSSLGSDK KKKGNKQPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGTS AILNFPELSD VLPRPASLSP RDVRAAATKA ALMEFGATAF CQESETNGTV  120
ASESEGNETA ASSIRSDSET SETASFSATS IDEESTVSDN LDKIVELPSL GTSLDESNEF  180
VFFDSLEDLV YIPPWLHSGM EDGFTYNNDS PFKVCEESFS WNHLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-181477973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448048.11e-163PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0808e-95ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3BLR51e-144A0A0D3BLR5_BRAOL; Uncharacterized protein
STRINGBo3g171090.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-91ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]