PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8969_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 849aa MW: 94032.8 Da PI: 5.5417 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.4 | 6.4e-19 | 155 | 230 | 22 | 99 |
H.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 22 faeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+++ ++ +++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l+v+v+r+ RrC8969_p1 155 FCKTLtA-TQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLMVGVRRA 230 5555542.3333459************************************************..4577778*****97 PP | |||||||
2 | Auxin_resp | 109.7 | 3.1e-36 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F +++nPra+++eFv++++k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+ RrC8969_p1 255 AAHATANRTPFLIFFNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 338 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-25 | 146 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-26 | 151 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-13 | 154 | 229 | No hit | No description |
SMART | SM01019 | 1.1E-11 | 155 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-16 | 155 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 168 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-31 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.4E-9 | 729 | 829 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.909 | 743 | 827 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.96E-7 | 757 | 821 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MSSFACVEDK MKTNGLVNGG GTTATSQSSL LEEMKLLKDQ SGTRKPVINS MLWHACAGPL 60 VSLPQVGSLV YYFSQGHSEQ VSVSTRRSAT TQVPNYPNLP SQLMCQVHNV TLHADKDSDE 120 IYAQMSLQPV HSERDVLPVP DFGLLRGSKH PSEYFCKTLT ATQPPTQELV VRDLHENTWT 180 FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK SQLMVGVRRA NRQQTALPSS 240 VLSADSMHIG VLAAAAHATA NRTPFLIFFN PRACPAEFVI PLAKYRKAIC GSQLSVGMRF 300 GMMFETEDSG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE WDEPGCNDKP TRVSPWDIET 360 PESLFIFPSL TSGLKRQLHP SYFAGETEWG SLIKRPLTNG VVPYASFPNM ASEQLMKMMM 420 MRPHGNQNAV TSFMSEMQQN VVMGHGGCLL GDVNMQQQPM VMNQVVQNNN PSVSNTSGQE 480 QNLSQSMNAP TNTESSSGRV NHGNKEQSIE QARVCNEEKV NELIQKPSGL SPLQAADPCP 540 EQIYPTQQSD PVNGFSFLET EELTSQVSSF QSLAGSYKQP LMLSSNESSP VVLPDSTNSP 600 LFQDVWDNQL NGLKFDQFSP WMQQDLYGGC QNMCMSNSTN SNILDPPPLS NTVLDDFCAI 660 KETEFNCLVG NNNNNNNNSF AQDVQSQITS ASFAESQALS RQDNSGGTGG TSSSNVDFDD 720 TSLLQQQNNS KGSWQKLATP RVRTYTKVQK TGSVGRSIDV TSFRDYEELK SAIECMFGLE 780 GLLTRPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI KILSPTEVQQ MSEEGMKLLN 840 SACINDLKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 363 | 2 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979466 | 0.0 | JN979466.1 Brassica rapa subsp. pekinensis auxin response factor 5-2 (ARF5-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449492.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Refseq | XP_018449493.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A3P6BWE7 | 0.0 | A0A3P6BWE7_BRACM; Auxin response factor | ||||
STRING | Bo8g069820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |