PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8926_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 215aa MW: 24857 Da PI: 8.6167 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 26 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T++E+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ RrC8926_p1 26 RNPFTKDEEERLLASHRIHGNR-WSVIARFFP-GRTDNAVKNHWHV 69 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.44E-17 | 15 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-19 | 19 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.433 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-15 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-14 | 26 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.67E-12 | 28 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMCSRGHWRP AEDEKLRELL DPRINRNPFT KDEEERLLAS HRIHGNRWSV IARFFPGRTD 60 NAVKNHWHVI MARRGRELSK LHPRDLGHDG TTVATIGYDG CDKKKRLATA TAINCPRQFS 120 HISHFQLLKE FLTGKIGFCN NNTPINDAIN QTKRPMEFYD FLQVKTNSKK PEVIDNSRKY 180 EEEDDVHEHN HNHNANCVPF IDFLSVGNSA SQGLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437706.1 | 1e-140 | PREDICTED: trichome differentiation protein GL1-like | ||||
Refseq | XP_018437708.1 | 1e-140 | PREDICTED: trichome differentiation protein GL1-like | ||||
Swissprot | Q6R0C4 | 1e-115 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A3N6T6Y6 | 1e-139 | A0A3N6T6Y6_BRACR; Uncharacterized protein | ||||
STRING | Bo8g104600.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2818 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-111 | myb domain protein 52 |
Publications ? help Back to Top | |||
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