PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8888_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18630 Da PI: 6.7691 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.1e-17 | 86 | 133 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 +++kGVr+++ +g+W AeI+dp + +r +lg+f ta++Aaka++ a+ RrC8888_p2 86 KKHKGVRQKP-SGKWCAEIWDP-----SlhRRRWLGTFPTAKMAAKAYDDAAAD 133 589*****99.7*********9.....445********************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.8E-9 | 87 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.808 | 87 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-20 | 87 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-14 | 87 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-23 | 87 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 88 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-15 | 90 | 122 | No hit | No description |
PRINTS | PR00367 | 3.0E-6 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MDQSENLPSC NQKPTRLTRD QEHVIMVSAL RQVISNGLGD TSSSNSVAFE ALHQPLDAGP 60 CPLCNITGCH GCAFPVHEEI EKEKEKKHKG VRQKPSGKWC AEIWDPSLHR RRWLGTFPTA 120 KMAAKAYDDA AADLVQRKAA RRCGSMNGEE PTTTTVEEDE GEIFGPVSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481212.1 | 1e-86 | PREDICTED: ethylene-responsive transcription factor ERF120-like | ||||
Swissprot | Q9SK67 | 1e-60 | EF120_ARATH; Ethylene-responsive transcription factor ERF120 | ||||
TrEMBL | A0A3P6A8C9 | 1e-79 | A0A3P6A8C9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DRE4 | 1e-79 | M4DRE4_BRARP; Uncharacterized protein | ||||
STRING | Bra019087.1-P | 2e-80 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20350.1 | 3e-48 | ERF family protein |