PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G20350.1 | ||||||||
Common Name | ERF120, F11A3.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17460.7 Da PI: 9.2601 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.5e-16 | 85 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr ++ +g+W+AeI+dps + r +lg+f tae+Aaka+ a+ ++ g AT2G20350.1 85 KKHKGVRKKP-SGKWAAEIWDPSL---KVRRWLGTFPTAEMAAKAYNDAAAEFVG 135 589****999.7*********943...5999****************99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.61E-18 | 85 | 121 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-15 | 86 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-30 | 86 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.73 | 86 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-20 | 86 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-7 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-7 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MENSENVPSY DQNINFTPNL TRDQEHVIMV SALQQVISNV GGDTNSNAWE ADLPPLNAGP 60 CPLCSVTGCY GCVFPRHEAI IKKEKKHKGV RKKPSGKWAA EIWDPSLKVR RWLGTFPTAE 120 MAAKAYNDAA AEFVGRRSAR RGTKNGEEAS TKKTTEKN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18399326 | 0.0 | ||||
Genevisible | 265304_at | 0.0 | ||||
Expression Atlas | AT2G20350 | - | ||||
AtGenExpress | AT2G20350 | - | ||||
ATTED-II | AT2G20350 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G20350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G20350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT024698 | 0.0 | BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179625.1 | 1e-116 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9SK67 | 1e-117 | EF120_ARATH; Ethylene-responsive transcription factor ERF120 | ||||
TrEMBL | A0A178VV22 | 1e-113 | A0A178VV22_ARATH; Uncharacterized protein | ||||
STRING | AT2G20350.1 | 1e-116 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT2G20350.1 |
Entrez Gene | 816554 |
iHOP | AT2G20350 |
wikigenes | AT2G20350 |
Publications ? help Back to Top | |||
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