PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC883_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 239aa MW: 27934 Da PI: 5.256 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.4 | 3e-35 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+++ed++++e+isw+e+g+ f+v+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++++ weF+++ F+kg++el+++i+ RrC883_p2 42 FLVKTYKVVEDPTTNEVISWNEDGTGFIVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVSTTR---------WEFSNEMFRKGQRELMCNIR 129 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ks RrC883_p2 130 RRKS 133 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 32 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.94E-33 | 37 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.3E-57 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-18 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.3E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-18 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-18 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEDDHLRCND NTNNEEERLP LDFMTGKQTY TAELQPQQPP PFLVKTYKVV EDPTTNEVIS 60 WNEDGTGFIV WQPAEFARDL LPTLFKHCNF SSFVRQLNTY GFRKVSTTRW EFSNEMFRKG 120 QRELMCNIRR RKSCPHSHSH NKSHQVVPIT TREKQEDHHL EDQRSSSTSS SSVYSALLDE 180 NKCLKNENEF LSSELGKTKK KCKQLMELVE RYRGEDEEGE TDDDDSDDQG LKLFGVKLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 8e-22 | 40 | 134 | 3 | 108 | Heat shock factor protein 2 |
5d8l_B | 8e-22 | 40 | 134 | 3 | 108 | Heat shock factor protein 2 |
5d8l_D | 8e-22 | 40 | 134 | 3 | 108 | Heat shock factor protein 2 |
5d8l_F | 8e-22 | 40 | 134 | 3 | 108 | Heat shock factor protein 2 |
5d8l_H | 8e-22 | 40 | 134 | 3 | 108 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018476058.1 | 1e-154 | PREDICTED: heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 1e-126 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A0D3B6A0 | 1e-140 | A0A0D3B6A0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g035750.1 | 1e-141 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10814 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 1e-120 | heat shock transcription factor B3 |