PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC867_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 534aa    MW: 58349.8 Da    PI: 7.0154
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC867_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31211268260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ d+++++i+Y+g+H+h+k
  RrC867_p3 211 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFETSH-DGHITDIIYKGTHDHPK 268
                8***************************************9.***************85 PP
2WRKY49.86.8e-16365411159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+            Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  RrC867_p3 365 LDDGYRWRKYGQKV------------CTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 411
                59***********7............********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.343205269IPR003657WRKY domain
SuperFamilySSF1182902.62E-24208269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-26209269IPR003657WRKY domain
SMARTSM007741.7E-32210268IPR003657WRKY domain
PfamPF031062.7E-23211267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-22350413IPR003657WRKY domain
SuperFamilySSF1182902.75E-19357413IPR003657WRKY domain
PROSITE profilePS5081125.591360413IPR003657WRKY domain
SMARTSM007741.3E-22365412IPR003657WRKY domain
PfamPF031066.4E-10366411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MNPQANNDRE VDCSATVDPT ARHNSAGGGG ARYKLMSPAK LPISRSTNTN ITIPPGLSPT  60
SFLESPVFIS NIKPEPSPTT GSLFKPRPVH VSSSSYTGRA FQQTTFTEHK SSEFEFRPPA  120
SNMVYAELDK HKRDSPVQFQ QVQGGHGSSH SPSSITEAAA ASSSEQSRPT PPAQTPPTSS  180
DIPAGSDQEE SVQTSQNESR GSAPPPTVLA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN  240
CEVKKLFETS HDGHITDIIY KGTHDHPKPQ PGRRNSGGVG MAAQEDRGVY NLSQAVEQTG  300
NPEVPSTTDD GGDVAASNRN KDEAEDDDPY TKRRRLDGTM EVTPLVKPIR EPRVVVQTLS  360
EVDILDDGYR WRKYGQKVCT APGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPTSKSSSN  420
HEIQPRFRPP DETDTISLNL GVGISSNGPT NHTSNENQQL VINQTHPNGV GFRFVHAAPP  480
PMSTYYASLN SGMNNQYGPR ETQNENQNGD ISSLNHSSYP YPHNNNIGRI QSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27209413877Probable WRKY transcription factor 4
2lex_A5e-27209413877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331335KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450367.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3P6FR440.0A0A3P6FR44_BRAOL; Uncharacterized protein (Fragment)
STRINGBra010431.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein