PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8676_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 212aa    MW: 23686.3 Da    PI: 6.9605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8676_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000216082123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C + F ++  L  H++ H
  RrC8676_p1 60 FSCNYCRRKFYSSQALGGHQNAH 82
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.47E-65788No hitNo description
PROSITE profilePS5015711.3856087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTESDDASLE LPAREGDTSL NQDLSKQESI IPLSLDLKLN DSFNNDEQNG TKCQSNPRVF  60
SCNYCRRKFY SSQALGGHQN AHKRERTMAK RAMHMGRMFG HHHRPYTYTS SSLGMQAHSS  120
LLHHTLSQPQ PPPHLARFHH QGYFGNTVPV FFDYDDGSDL FWPGSFRQVV EEAEAPVVVA  180
VKESGLDLNT AAVNGTVVGN NNSSKPDLTL RL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447711.11e-160PREDICTED: zinc finger protein 7
RefseqXP_018447712.11e-160PREDICTED: zinc finger protein 7
SwissprotQ392661e-119ZFP7_ARATH; Zinc finger protein 7
TrEMBLA0A078JPJ21e-143A0A078JPJ2_BRANA; BnaA08g31130D protein
TrEMBLA0A397YD781e-143A0A397YD78_BRACM; Uncharacterized protein
TrEMBLA0A3P6BNY51e-143A0A3P6BNY5_BRAOL; Uncharacterized protein
TrEMBLM4D3C11e-143M4D3C1_BRARP; Uncharacterized protein
STRINGBra010975.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139991725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.12e-90zinc finger protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]