PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8563_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WOX | ||||||||
Protein Properties | Length: 254aa MW: 28762.3 Da PI: 9.7663 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 92 | 151 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ RrC8563_p1 92 TRWNPTQEQIGILEILYKGgMRTPNAQQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 151 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.9 | 3.9e-37 | 92 | 153 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq RrC8563_p1 92 TRWNPTQEQIGILEILYKGGMRTPNAQQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 153 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.734 | 87 | 152 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-12 | 88 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.1E-7 | 89 | 156 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-18 | 92 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.72E-5 | 92 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 93 | 151 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKVHEFSNGF SSWEQQESPS SLSLSCKRFR PLAPKLSVSP SSPPSSSSGV TSATFDLKSF 60 IKPDQEADPT KSDYSLEHKR DFSQVEMHPG GTRWNPTQEQ IGILEILYKG GMRTPNAQQI 120 EHITSQLGKY GKIEGKNVFY WFQNHKARER QKQKRNNLIS LGCQGSLSTT NVSNASVTMK 180 TRTSSSPDLK RESLVMKELV EENEYKRTCR SWGFENLKIE NRRNINSSIN ATVATTFNID 240 NVTLELFPLH PEGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018487222.1 | 1e-176 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 1e-127 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A078I3Z8 | 1e-159 | A0A078I3Z8_BRANA; BnaA05g18600D protein | ||||
TrEMBL | A0A397ZHJ7 | 1e-159 | A0A397ZHJ7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4ETT0 | 1e-159 | M4ETT0_BRARP; Uncharacterized protein | ||||
STRING | Bra032212.1-P | 1e-160 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5980 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-114 | WUSCHEL related homeobox 4 |