PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC842_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 184aa    MW: 20268.2 Da    PI: 7.5025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC842_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.3e-39151151100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf a+q +++fa+vhk+FGasn +k+l +lp ++r da+++l+yeA ar+rdPvyG+vg++++lq+q+++l+ae+a+++
  RrC842_p10  15 PCGACKFLRRKCVSGCVFAPYFDADQgTATFAAVHKVFGASNASKMLLRLPLHKRLDAVATLCYEALARLRDPVYGSVGHLFSLQHQVMNLQAEIAHVQ 113
                 7*************************88********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  RrC842_p10 114 AR 115
                 76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90414116IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMTGNLNGGG RGEGPCGACK FLRRKCVSGC VFAPYFDADQ GTATFAAVHK VFGASNASKM  60
LLRLPLHKRL DAVATLCYEA LARLRDPVYG SVGHLFSLQH QVMNLQAEIA HVQARLSTFQ  120
RFSVIPTQQI QQPPFDLAHN NEYPMDFVWE EEQLHQAGNE DGELAMQFVP KYLPAVKLPA  180
CTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-351412710124LOB family transfactor Ramosa2.1
5ly0_B7e-351412710124LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-121AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.11e-134PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.11e-134PREDICTED: LOB domain-containing protein 19-like
SwissprotO221322e-92LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A0D3BQ336e-98A0A0D3BQ33_BRAOL; Uncharacterized protein
STRINGBo4g024610.11e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-95LOB domain-containing protein 19