PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC841_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23512.4 Da PI: 6.7874 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.8 | 1.6e-24 | 36 | 84 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+++s+rqvtfskRr+g++KKA ELSvLC+a++ +i fs +g+++++ RrC841_p5 36 KPINEESRRQVTFSKRRKGLFKKAAELSVLCGAQIGIITFSRRGRIFTF 84 6899********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.862 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-28 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-23 | 29 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-21 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-23 | 38 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-21 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-21 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEDGEPSSTS TCLPLTAQKP QQNPKTTKGR QKIEIKPINE ESRRQVTFSK RRKGLFKKAA 60 ELSVLCGAQI GIITFSRRGR IFTFGNVDTL AETYLRKAPV TLRSHPGGGD GGEDKWWERA 120 VESVPEEEME EYMAALSGLR DNLWTRICQM GGDHRTVQMD APVFQNPTAE IEWKATDENL 180 TVRNDQSQAG NDGYLDIHAE VPFLSQSRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456737.1 | 1e-142 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_018456752.1 | 1e-142 | PREDICTED: MADS-box transcription factor 23-like | ||||
TrEMBL | A0A3P6G0K7 | 1e-108 | A0A3P6G0K7_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g115840.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 2e-66 | M-type_MADS family protein |