PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8375_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 321aa    MW: 35215.4 Da    PI: 4.7696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8375_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-15124171152
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                 ++  GVr++k +g+W+AeIr+p     + +r +lg+++t e+Aa a+   +++
  RrC8375_p1 124 TKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYDTLEQAADAYATKKLE 171
                 5789*****9.**********72....36******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-10124166IPR001471AP2/ERF domain
CDDcd000181.96E-18124165No hitNo description
PROSITE profilePS5103218.189125183IPR001471AP2/ERF domain
SMARTSM003809.1E-13125179IPR001471AP2/ERF domain
PRINTSPR003671.9E-6126137IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-14127172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-18128173IPR001471AP2/ERF domain
PRINTSPR003671.9E-6148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAEPKKRSSL QATKPSRKPK KKTFQLNRLP GLSEDLKTMR KIRFVVNDPY ATDYSSGEED  60
AETSRRRKRY VCEIDRPFSQ ATAQAESDES SYVQESNNSK ARLSPCSSKK ASQSQVVGRR  120
SSVTKPVGVR QRKWGKWAAE IRHPITKTRT WLGTYDTLEQ AADAYATKKL EFDALAAAAT  180
SAAAAPCDST ASNDSVSMLS NVEAVSSIQA GDSKKAGFGF NFADVQIPDM GCFIDESLIP  240
NACELDFLLA EEKDDQLLDD YCGIDDMNII GLECDGPSEL PDYDFSDVEI DLGLIGTTID  300
KFAFVDHLAT STTTPLNIAC P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895730.0AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477149.10.0PREDICTED: ethylene-responsive transcription factor ERF119
SwissprotQ9LUA21e-148EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLA0A0D3DAW70.0A0A0D3DAW7_BRAOL; Uncharacterized protein
STRINGBo7g082250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-144ERF family protein