PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G25890.2 | ||||||||
Common Name | CRF11, ERF119, MPE11.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 332aa MW: 36732.2 Da PI: 4.7968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.1 | 2.6e-14 | 129 | 176 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 s+ GVr++k +g+W+AeIr+p + r +lg++ t e+Aa a+ +++ AT3G25890.2 129 SKPVGVRQRK-WGKWAAEIRHPI----TkVRTWLGTYETLEQAADAYATKKLE 176 7899*****9.**********72....36******************877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.16E-18 | 129 | 170 | No hit | No description |
Pfam | PF00847 | 1.1E-8 | 129 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-12 | 130 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-14 | 130 | 177 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.176 | 130 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 131 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-18 | 133 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0032259 | Biological Process | methylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008168 | Molecular Function | methyltransferase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAERKKRSSI QTNKPNKKPM KKKPFQLNHL PGLSEDLKTM RKLRFVVNDP YATDYSSSEE 60 EERSQRRKRY VCEIDLPFAQ AATQAESESS YCQESNNNGV SKTKISACSK KVLRSKASPV 120 VGRSSTTVSK PVGVRQRKWG KWAAEIRHPI TKVRTWLGTY ETLEQAADAY ATKKLEFDAL 180 AAATSAASSV LSNESGSMIS ASGSSIDLDK KLVDSTLDQQ AGESKKASFD FDFADLQIPE 240 MGCFIDDSFI PNACELDFLL TEENNNQMLD DYCGIDDLDI IGLECDGPSE LPDYDFSDVE 300 IDLGLIGTTI DKYAFVDHIA TTTPTPLNIA CP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.37307 | 0.0 | flower| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258074_at | 0.0 | ||||
Expression Atlas | AT3G25890 | - | ||||
AtGenExpress | AT3G25890 | - | ||||
ATTED-II | AT3G25890 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G25890.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G25890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023041 | 0.0 | AB023041.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPE11. | |||
GenBank | AK229550 | 0.0 | AK229550.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL18-01-N04. | |||
GenBank | AY560877 | 0.0 | AY560877.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g25890) mRNA, complete cds. | |||
GenBank | BT029518 | 0.0 | BT029518.1 Arabidopsis thaliana At3g25890 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078209.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Refseq | NP_189218.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9LUA2 | 0.0 | EF119_ARATH; Ethylene-responsive transcription factor ERF119 | ||||
TrEMBL | A0A178VGC2 | 0.0 | A0A178VGC2_ARATH; CRF11 | ||||
STRING | AT3G25890.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G25890.2 |
Entrez Gene | 822185 |
iHOP | AT3G25890 |
wikigenes | AT3G25890 |
Publications ? help Back to Top | |||
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