PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC82_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 434aa    MW: 47684.1 Da    PI: 7.044
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC82_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.7e-123762126
              --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
              ++++ C+ff+rtG+C yG++C+F+H+
  RrC82_p1 37 PGERDCQFFLRTGQCGYGNSCRFNHP 62
              5789*********************9 PP
2zf-CCCH36.86.7e-1283107327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               ++ C +f++tG CkyG++Ck++H++
  RrC82_p1  83 EPDCEYFLKTGACKYGSTCKYHHPK 107
               789********************96 PP
3zf-CCCH29.21.6e-09128151326
               S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
               ++ C+++++ G C++G  CkF+H+
  RrC82_p1 128 EKSCPYYMQKGVCRFGVACKFHHP 151
               667********************8 PP
4zf-CCCH34.53.4e-11268291427
               ---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
               ++Crff+ tGtCkyGd Ck+ H++
  RrC82_p1 268 PECRFFMNTGTCKYGDDCKYFHPK 291
               79********************96 PP
5zf-CCCH33.47.9e-11300324126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ++++ C +f + G+CkyG++CkFaH+
  RrC82_p1 300 PGQPACGNFKA-GFCKYGANCKFAHP 324
               57899******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9533664IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-63663IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-93862IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-54262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.56880108IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-680107IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-983107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-685108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-486106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6124153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713125153IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4125152IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4130150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544264292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7265293IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6265291IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9268291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6270291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61299326IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7299325IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8301324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5305323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEDYVVGDCS LTMYSNIYTF RRMNVNEEQS SPYPDRPGER DCQFFLRTGQ CGYGNSCRFN  60
HPLSHLPQGV LYHRDELPER IGEPDCEYFL KTGACKYGST CKYHHPKDRN GAGPVLFNVL  120
GYPMRQGEKS CPYYMQKGVC RFGVACKFHH PHPNPQPHNG HSSPYGMSSF PSVGFPYGGG  180
LTMMSLPPAS YGVMPPPPPP PANYGAMPRP QVPHPQAYMP FMVAPPQGWS TYMAGTNPIY  240
NVKTQPDSSS SASVPVAVTY QSSLSESPEC RFFMNTGTCK YGDDCKYFHP KERMLISARP  300
GQPACGNFKA GFCKYGANCK FAHPLPLNPY DGTSLTMPTA YASPVTTHHL PSRSDSTDLS  360
NGNKPSTETE KQDERSDKSE VQEPSQLNIS DATALSNGKS DAESPSSETK KHESSDNASQ  420
LDSSGKQDSS DNAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433239.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLM4CMV50.0M4CMV5_BRARP; Uncharacterized protein
STRINGBra005543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-164zinc finger nuclease 2