PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8288_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 217aa    MW: 24511.2 Da    PI: 10.0005
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8288_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind24.66.8e-08139141
   GAGA_bind  1 mdddgsrernkgyyepaaslkenlglqlmssiaerdakire 41
                md+dg  +rn+gyye++ ++k  +g+ql+ s+  rd+k  +
  RrC8288_p1  1 MDEDGLSNRNWGYYEQS-QFKPSIGFQLIPSM-HRDSKFFN 39
                9***************9.**************.69999833 PP
2GAGA_bind265.72.5e-8164217141301
   GAGA_bind 141 aeeakekkkk.kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
                 ++e+ +++++   ++r+++pk kk++k k+        +  +++++++   +ksi++v+ngv++D++ lPvPvCsCtG ++qCY+WG+GGWqSaCCtt+
  RrC8288_p1  64 VDESLKRRQCsGGGERGADPKGKKERKLKE--------SVVPRMQRERSPLRKSIEMVINGVTIDIGCLPVPVCSCTGFSQQCYRWGCGGWQSACCTTN 154
                 344444444404567777777777777777........3334445566789************************************************ PP

   GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 +S+yPLP++tk+rgaRiagrKmSqgafkk+LekL+++G+d+snp+DLk hWAkHGtnkfvtir
  RrC8288_p1 155 VSMYPLPMNTKKRGARIAGRKMSQGAFKKVLEKLSGDGFDFSNPIDLKFHWAKHGTNKFVTIR 217
                 **************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.0E-1101217IPR010409GAGA-binding transcriptional activator
PfamPF062176.2E-7667217IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDEDGLSNRN WGYYEQSQFK PSIGFQLIPS MHRDSKFFNN LPNNHHTLLG AQPMQLLQIP  60
EPEVDESLKR RQCSGGGERG ADPKGKKERK LKESVVPRMQ RERSPLRKSI EMVINGVTID  120
IGCLPVPVCS CTGFSQQCYR WGCGGWQSAC CTTNVSMYPL PMNTKKRGAR IAGRKMSQGA  180
FKKVLEKLSG DGFDFSNPID LKFHWAKHGT NKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468727.11e-128PREDICTED: protein BASIC PENTACYSTEINE3
SwissprotQ9C9X61e-100BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBLM4EYR71e-121M4EYR7_BRARP; Uncharacterized protein
STRINGBra033959.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153471518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.11e-103basic pentacysteine 3