PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC81_p8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 22308.5 Da PI: 10.3074 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.9 | 7.7e-11 | 104 | 142 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +GV++ k + +W A I++ +++++lg+f + eeAa+++++ RrC81_p8 104 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDR 142 79**96.5.7*********6.....6******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-5 | 103 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-4 | 103 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-8 | 104 | 143 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-6 | 105 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MITGIPNPNG VAAYSPVPKE ELLRHYLFWF WQKTPIVEGS RSQRQRTPSK YLMQFRSDSS 60 AISPDDYGSI SPKMEQDVCD SDQPLKRRKR HRRKQVKNQE PCLMRGVYYK NMKWQAAIKV 120 EKRQIHLGTF SSQEEAARLY DREPNFELSE EDKRKLKQQS WEGFLACTRR KIINKKPKRR 180 MEQEELE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL079349 | 1e-59 | AL079349.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F25G13, partial sequence (ESSA project). | |||
GenBank | AL161535 | 1e-59 | AL161535.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35. | |||
GenBank | CP002687 | 1e-59 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018451857.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_018451859.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_018451860.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_018451861.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Swissprot | Q56XP9 | 6e-64 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A078IFC5 | 1e-100 | A0A078IFC5_BRANA; BnaC08g08940D protein | ||||
TrEMBL | A0A0D3DLF6 | 1e-100 | A0A0D3DLF6_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g033910.1 | 1e-101 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-58 | ERF family protein |