PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8172_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 465aa MW: 51999 Da PI: 4.8527

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8172_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	259	300	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L++l+P++ +K++ a+i+ +A++YIk+L RrC8172_p2 259 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 300 59*******************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-13	243	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.596	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	257	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-12	259	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	259	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-11	260	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0052543	Biological Process	callose deposition in cell wall
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MEEERESIYE DMSCFDPNIP AQATAESSSG PPPPPPPQTM VAGSTSNSNC SVDVEELPEF 60 HLSPQDCPQP SSTPLQFHIN PLPPPPPPCD NQYQNNDIDL IHQMARDQHQ QQQQANWENG 120 YQDFANMVPN SSTTPDLLSL LHLPRCSLPQ SMLPNSFSDI MSSSSAAAVM YDPLFHLNFP 180 LQTRDHQQRN NSCFLGVEDQ IDQMDANGVG GGGINMMYYE GVSNNNNGGF DSGVLEFSSG 240 GNNHRKGRGG SGKSRTFPTE RERRVHFNDR FSDLKSLIPN PTKNDRASIV GEAIDYIKEL 300 LRTIEDLKML VEKKKFGKFR SKKRARVGGE EEEEDGEQEG DTVVYKPKSE VDQSCFNNNN 360 KALRCSWLKR KSKVTEVDVR IIDDEVTIKV VQKKKINCLL FTTRVLDQLQ LDLHHVAGGQ 420 IGEHYSFLFN TKICEGSCVY ASGIADTVME VVEKQYMEAV PPNGY

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MEEERESIYE DMSCFDPNIP AQATAESSSG PPPPPPPQTM VAGSTSNSNC SVDVEELPEF  60
HLSPQDCPQP SSTPLQFHIN PLPPPPPPCD NQYQNNDIDL IHQMARDQHQ QQQQANWENG  120
YQDFANMVPN SSTTPDLLSL LHLPRCSLPQ SMLPNSFSDI MSSSSAAAVM YDPLFHLNFP  180
LQTRDHQQRN NSCFLGVEDQ IDQMDANGVG GGGINMMYYE GVSNNNNGGF DSGVLEFSSG  240
GNNHRKGRGG SGKSRTFPTE RERRVHFNDR FSDLKSLIPN PTKNDRASIV GEAIDYIKEL  300
LRTIEDLKML VEKKKFGKFR SKKRARVGGE EEEEDGEQEG DTVVYKPKSE VDQSCFNNNN  360
KALRCSWLKR KSKVTEVDVR IIDDEVTIKV VQKKKINCLL FTTRVLDQLQ LDLHHVAGGQ  420
IGEHYSFLFN TKICEGSCVY ASGIADTVME VVEKQYMEAV PPNGY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00285	DAP	Transfer from AT2G31220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	0.0	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	0.0	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	0.0	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	0.0	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437135.1	0.0	PREDICTED: transcription factor bHLH10-like
Swissprot	Q84TK1	0.0	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A3N6QTS0	0.0	A0A3N6QTS0_BRACR; Uncharacterized protein
STRING	Bo4g052460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-179	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]