PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8100_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 389aa    MW: 42244.8 Da    PI: 7.3103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8100_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046171193123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  RrC8100_p1 171 YQCKTCDRTFPSFQALGGHRASH 193
                 9***********99999998887 PP
2zf-C2H2130.00031250272123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  RrC8100_p1 250 HECGICGAEFTSGQALGGHMRRH 272
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.34E-8170193No hitNo description
PfamPF139122.3E-12170195IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471171198IPR007087Zinc finger, C2H2
SMARTSM003550.028171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576673.34E-8245272No hitNo description
Gene3DG3DSA:3.30.160.608.0E-4248274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11249274IPR007087Zinc finger, C2H2
SMARTSM003550.047250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93250274IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEIAEEAIST GKEQSLILKG KRTKRQRPLS PIPFSIVPPV SSQEPEVEED STSLVSKEKS  60
LINDEINTNK NDNNILINGV TSPASSSSNN NATLKTAADE EDQDMANCLI LLAQGHYIPQ  120
QQPQQTRQFM MSYQESGNNN NNAYRSSSRR FLETSSPNGT TSGGRAGYYV YQCKTCDRTF  180
PSFQALGGHR ASHKKPKAAA GLHSDHDLKK SIYNDTVSLH LNNVPTATPK NNSSHRSLVV  240
YGKTGNNKVH ECGICGAEFT SGQALGGHMR RHRGAVVASA PSASAATVRV AATAATANTA  300
LSLSPMSFDQ MSVHPVHAPV KRARSAVVSL DLDLNLPAPE DVNRVNGLSF ASKQEQEHEH  360
EHEHEQTQHI EEQKSLVLSS APTLVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489983.10.0PREDICTED: zinc finger protein ZAT5
RefseqXP_018489986.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A397ZEM10.0A0A397ZEM1_BRACM; Uncharacterized protein
STRINGBo5g137370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-138C2H2 family protein