PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8042_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 85aa    MW: 10471.1 Da    PI: 8.2162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8042_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.58.6e-09984564
         NAM  5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvka..eekewyfFskr 64
                f+FhP  eelv +yL +k ++ ++++  +ik +d+++ + w+Lp+                  +  a  +e+e+y+F+++
  RrC8042_p1  9 FQFHPAVEELVRDYLMRKKSSPDFRC--FIKMMDVFDNDLWTLPHvreiqpywsqkaveplerS--AfyKEHECYYFVRK 84
                99****************99999888..79*************955788888887766666542..14467789999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.89585IPR003441NAC domain
PfamPF023652.3E-4883IPR003441NAC domain
SuperFamilySSF1019416.41E-7982IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MLGMLSNRFQ FHPAVEELVR DYLMRKKSSP DFRCFIKMMD VFDNDLWTLP HVREIQPYWS  60
QKAVEPLERS AFYKEHECYY FVRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00150DAPTransfer from AT1G19040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2625233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19040.19e-16NAC family protein