PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G19040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 20454.2 Da PI: 6.878 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42.3 | 2.3e-13 | 6 | 68 | 2 | 65 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrd 65 ++GfrF+P dee+ +yL +k+++ ++++ +ik++d+y+ +Pw L + v+ ++ ewy+F+k++ AT1G19040.1 6 TRGFRFRPADEEVT-DYLMRKTQSPEFSC--FIKTIDLYDKDPWVLGH-VRDpcyNHYEWYYFVKKN 68 78**********87.*********99988..7**************73.222233667******986 PP | |||||||
2 | NAM | 24.3 | 8.8e-08 | 113 | 142 | 3 | 34 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevi 34 GfrFhPtd+el++ yL++k+++ ++++ +i AT1G19040.1 113 YGFRFHPTDQELLSLYLTPKAHSPDFSC--FI 142 7*******************99988766..34 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-15 | 4 | 79 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.817 | 5 | 145 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-5 | 7 | 71 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-8 | 108 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-5 | 113 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSEVLTRGFR FRPADEEVTD YLMRKTQSPE FSCFIKTIDL YDKDPWVLGH VRDPCYNHYE 60 WYYFVKKNPL GNEYLDKPRL NGFEHPRLKW DVLKQIHDAL SSGQNVPPSV FTYGFRFHPT 120 DQELLSLYLT PKAHSPDFSC FIRERESYMP WSHGFLNMLD LLFTRTVNGT TL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18394687 | 0.0 | ||||
Genevisible | 259471_at | 0.0 | ||||
Expression Atlas | AT1G19040 | - | ||||
AtGenExpress | AT1G19040 | - | ||||
ATTED-II | AT1G19040 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00150 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G19040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G19040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC068602 | 0.0 | AC068602.2 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence. | |||
GenBank | BT029436 | 0.0 | BT029436.1 Arabidopsis thaliana At1g19040 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173338.1 | 1e-127 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | A0JQ66 | 1e-126 | A0JQ66_ARATH; At1g19040 | ||||
STRING | AT1G19040.1 | 1e-127 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26252 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | AT1G19040.1 |
Entrez Gene | 838486 |
iHOP | AT1G19040 |
wikigenes | AT1G19040 |
Publications ? help Back to Top | |||
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