PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC79_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 332aa    MW: 37083.4 Da    PI: 6.6828
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC79_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10208251548
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  RrC79_p10 208 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 251
                899********************************998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-13204268IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588206258IPR004827Basic-leucine zipper domain
PfamPF001702.9E-9208251IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-11208262No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-13208259No hitNo description
CDDcd147032.04E-22209259No hitNo description
PROSITE patternPS000360211226IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAQLPPKIPT MTTTTTPHWP DFSSQKLPSI AATAAATAAT AGQQNPTWMD EFLDFSSTRR  60
GTHRRSISDS IAFLEAPSSG VGNHHFDRFD DEQFMSMFND DVHQNHHNNN HNNHHGSVNG  120
NVGHTRSSSN TSTPSDHNSL SEEDNKEQPP SDNNLMDTTD NNNNVAGNNY NESDEVQSQC  180
KTEPQDGAPL SANQNSGGSS GNRINDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTS  240
LQTEVSVLSP RVAFLDHQRL LLNVDNSAIK QRIAALAQDK IFKDAHQEAL KREIERLRQV  300
YHQQSLKKME NNVSDQSQAD IKPSVEKEQL NA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4013000.0AF401300.1 Arabidopsis thaliana transcription factor bZIP61 (BZIP61) mRNA, complete cds.
GenBankAY0873560.0AY087356.1 Arabidopsis thaliana clone 34553 mRNA, complete sequence.
GenBankAY0930530.0AY093053.1 Arabidopsis thaliana pelota-like protein (At3g58120) mRNA, complete cds.
GenBankBT0087280.0BT008728.1 Arabidopsis thaliana At3g58120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485834.10.0PREDICTED: basic leucine zipper 61-like
SwissprotQ9M2K40.0BZP61_ARATH; Basic leucine zipper 61
TrEMBLM4CT380.0M4CT38_BRARP; Uncharacterized protein
STRINGBra007380.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-152bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]