PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC793_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 241aa    MW: 26394.3 Da    PI: 7.597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC793_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0587109123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ CgksF++   L  H  +H
  RrC793_p1  87 YKCSVCGKSFPSYQALGGHKTSH 109
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-986109No hitNo description
PfamPF139121.5E-1487111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-487109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78387114IPR007087Zinc finger, C2H2
SMARTSM003550.002287109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-9141168No hitNo description
PfamPF139125.1E-12145170IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12146168IPR007087Zinc finger, C2H2
SMARTSM003550.35146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
CDDcd000305.72E-4177226No hitNo description
Gene3DG3DSA:2.60.40.1504.6E-7188236IPR000008C2 domain
SuperFamilySSF495621.5E-6189236IPR000008C2 domain
PfamPF001682.1E-4192229IPR000008C2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALDTLHSPT STTAPPPFLT EPAENLESWT KRKRTKRHRI VDQSHPPTEE EYLALCLLML  60
ARGSSSDDDH HSPPPPPPPS DHHHRDYKCS VCGKSFPSYQ ALGGHKTSHR KPVSNNNEDT  120
NNSGNGNVTN NGKISNCLMG QSGKTHKCSI CFKSFPSGQA LGGHKRCHYD GGNGSNNHGF  180
DLNLPADHDE TLALKDLKIA VWNNNTLSTD DFIGNATIQL QKVLSQEYKD CTCTLQIKTG  240
G
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481055.11e-125PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-56AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A3N6QF901e-107A0A3N6QF90_BRACR; Uncharacterized protein
STRINGBra012914.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-65C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]