PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7906_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TALE | ||||||||
Protein Properties | Length: 593aa MW: 67232.8 Da PI: 7.1196 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.4 | 4.8e-08 | 398 | 435 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA++ gL+ +qV++WF N R + RrC7906_p1 398 FEHflHPYPSDVDKHILARQSGLSRSQVSNWFINARVR 435 554459******************************88 PP | |||||||
2 | BELL | 102 | 4.2e-33 | 256 | 327 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLl +lee+++rY +y+eq++ + +Fe+++g+g+a++Yt+lA++a+SrhFrcLkd +++qi RrC7906_p1 256 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAQAFEVAVGVGAAEMYTALASRAMSRHFRCLKDGLVGQI 327 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.2E-60 | 177 | 325 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-40 | 183 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.726 | 376 | 439 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.84E-10 | 379 | 440 | No hit | No description |
SMART | SM00389 | 5.5E-8 | 379 | 443 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-16 | 380 | 447 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 382 | 446 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.8E-17 | 396 | 435 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MASDQFHGHN HHQQHQHQMI NQIHGFDERN NNPTDHQQHH YNQQIFGSNS NMGMMIDFSR 60 HHQTGITSGM DHHHYHHQTS GGTVQNQLFE DSSSSMRLCS VNNNFSSEVN DERAPQRPSQ 120 GLSLSLSSSN PTSISLQSFD LRPQQQGYSG KSTHHQNLPH SQMMMLMNSH HQNNNSNHHQ 180 FQIGSSKYLI AAQELLSEFC SLGVKESDDE VMMKHKRKQK GKQQEDWDTS NNNKDQHEQS 240 ATTSSKKHVP PLHSLEFMEL QKRKAKLLAM LEELKRRYGH YREQMRLAAQ AFEVAVGVGA 300 AEMYTALASR AMSRHFRCLK DGLVGQIQAT SQALGERDED NRGVSIAARG ETPRLRLLDQ 360 ALRQQKSYRQ MSLVEAHPWR PQRGLPERAV TALRAWLFEH FLHPYPSDVD KHILARQSGL 420 SRSQVSNWFI NARVRLWKPM IEEMYCEETR GAEEQQMEIT NPMFMDTKPD PNQIMRVEPE 480 SLSSVVTKTG HKDNSNLGTA SFGSTFDFSS YSNQAVTYTG EGGVRDVSLT LGLQNGAVSL 540 ALSPVTAQGG PLYYGRDHME GSVQYTASML DDDQAQNLPY MNLMGAQSLH DMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-15 | 385 | 443 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-15 | 385 | 443 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352866 | 0.0 | AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477443.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A3P6CRB1 | 0.0 | A0A3P6CRB1_BRACM; Uncharacterized protein | ||||
STRING | Bra025497.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Publications ? help Back to Top | |||
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