PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7873_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 508aa    MW: 56670.2 Da    PI: 6.859
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7873_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.73.5e-25281333256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 ++++Wt+eLH++Fv+ave+L G + A+P++ilelmkv+gLt+++v+SHLQk+R++
  RrC7873_p1 281 KKVDWTQELHKKFVQAVEKL-GVD-AIPSRILELMKVDGLTRHNVASHLQKFRMH 333
                 689*****************.887.****************************96 PP
2Response_reg25.18.6e-104112920109
                   HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  20 kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   + +y +v++++d +eal  + +++  +++ ++ ++ +  d  e +k +++++  lp i++++    +++ +++ +Ga +fl Kp +pe+l +
    RrC7873_p1  41 SMDY-IVTTFTDESEALSAVFKSQesFHIAIIEVNTSAED--ESFKFLEAAKGLLPTIMISDDHCITTTMKCIALGAVEFLQKPLSPEKLKN 129
                   6789.9***********999555546*********99976..6677777788899**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011018.89321135IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.18E-628134No hitNo description
SuperFamilySSF521723.27E-1031137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-1135142No hitNo description
PfamPF000723.1E-536129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129415.901277335IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-23280335IPR009057Homeodomain-like
SuperFamilySSF466897.26E-16280336IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23281333IPR006447Myb domain, plants
PfamPF002497.7E-8283330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MVCTANDLSK WENFPKGLRV LLLHGCGNAI SAAETRSKLV SMDYIVTTFT DESEALSAVF  60
KSQESFHIAI IEVNTSAEDE SFKFLEAAKG LLPTIMISDD HCITTTMKCI ALGAVEFLQK  120
PLSPEKLKNI WQHVVHKAFN DEGASVSESL KPVKDSVVSM LNLDTNMTID EKDPAPSTPQ  180
LRQVSRLLDQ ENLNCSVENV NSPPEKENTE DHDIGESKLV DTTNHEENVI VKEEKGNSEK  240
EEEQGQTGDS VNFHKKEDET NKPINKSSGT KNFSGNKAIR KKVDWTQELH KKFVQAVEKL  300
GVDAIPSRIL ELMKVDGLTR HNVASHLQKF RMHRRNILPK EDHNHRWIQS RENHRQIQRQ  360
YNGFQQQHRP VMAYPFWGIP GVHPHGAVSP LWSPALPSAG QLPPWHCKPA YPTLNGNTWG  420
YPVGPPVTGT YFSHPLTGTF STPPVNQLDE EMIDQVIKEV ISKPGMPLPL GLKPPSAESV  480
ITDLSRRGIS AVPSSSSSCL INGSRRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14282332758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477633.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3P6F3020.0A0A3P6F302_BRAOL; Uncharacterized protein
STRINGBra012623.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]